RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 MIR1-1HGQ9H1L0 117 aa13.03□□□□□ -0.32
VPS33A-202ENST00000451053 CASS4Q9NQ75 786 aa13.03□□□□□ -0.32
VPS33A-202ENST00000451053 ZDHHC18Q9NUE0 388 aa13.03□□□□□ -0.32
VPS33A-202ENST00000451053 TMEM74BQ9NUR3 256 aa13.03□□□□□ -0.32
VPS33A-202ENST00000451053 CA5BQ9Y2D0 317 aa13.03□□□□□ -0.32
VPS33A-202ENST00000451053 PLXNA2O75051 1894 aa13.03□□□□□ -0.32
VPS33A-202ENST00000451053 MYLKQ15746 1914 aa13.02□□□□□ -0.32
VPS33A-202ENST00000451053 TRPM6Q9BX84 2022 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 DOCK9Q9BZ29 2069 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 AP3B1O00203 1094 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 PSMD11O00231 422 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 BUD23O43709 281 aaKnown RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 NHLH1Q02575 133 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 CREB5Q02930 508 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 CDH17Q12864 832 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 IRF4Q15306 451 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 CERCAMQ5T4B2 595 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 LAIR1Q6GTX8 287 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 ZDHHC24Q6UX98 284 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 KDM7AQ6ZMT4 941 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 GLT6D1Q7Z4J2 308 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 TMC3Q7Z5M5 1100 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 TECPR1Q7Z6L1 1165 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 ZCCHC9Q8N567 271 aaKnown RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 NAT8LQ8N9F0 302 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 DNAAF3Q8N9W5 541 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 TP53I13Q8NBR0 393 aaPredicted RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 MCUQ8NE86 351 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 C1orf216Q8TAB5 229 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 HNRNPLLQ8WVV9 542 aaKnown RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 ASB12Q8WXK4 309 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 PIGKQ92643 395 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 DTD2Q96FN9 168 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 LOXL4Q96JB6 756 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 SERAC1Q96JX3 654 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 SLC6A18Q96N87 628 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 SRPK1Q96SB4 655 aaKnown RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 ZFYVE1Q9HBF4 777 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 XAB2Q9HCS7 855 aaKnown RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 MBNL1Q9NR56 388 aaKnown RBP13.02□□□□□ -0.33
VPS33A-202ENST00000451053 HACD3Q9P035 362 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 CD84Q9UIB8 345 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 PILRBQ9UKJ0 227 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 DMTF1Q9Y222 760 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 KCTD3Q9Y597 815 aa13.02□□□□□ -0.33
VPS33A-202ENST00000451053 SPAG17Q6Q759 2223 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 PRAMEF26H0Y7S4 382 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 GOLGA8MH3BSY2 632 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 EIF3HO15372 352 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS33A-202ENST00000451053 PPFIA2O75334 1257 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 HNRNPA2B1P22626 353 aaKnown RBP13.01□□□□□ -0.33
VPS33A-202ENST00000451053 ECHS1P30084 290 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 AKT2P31751 481 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 IGFALSP35858 605 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 NUDT1P36639 197 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 ARL4CP56559 192 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 CLDN2P57739 230 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 MTM1Q13496 603 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 PTPRCAPQ14761 206 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 POU6F1Q14863 301 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 SLMAPQ14BN4 828 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 AGERQ15109 404 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 TRADDQ15628 312 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 WSCD2Q2TBF2 565 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 PEAR1Q5VY43 1037 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-202ENST00000451053 LAYNQ6UX15 382 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 GCNT7Q6ZNI0 430 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 SYT12Q8IV01 421 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 PDIK1LQ8N165 341 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 PELI3Q8N2H9 469 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 TMEM145Q8NBT3 493 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 CENPTQ96BT3 561 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 NUS1Q96E22 293 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 LENG8Q96PV6 779 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-202ENST00000451053 ARRDC1-AS1Q9H2J1 176 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 SEMA4AQ9H3S1 761 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 TRABDQ9H4I3 376 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 TM9SF3Q9HD45 589 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 BPIFA1Q9NP55 256 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 AASDHPPTQ9NRN7 309 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 ARL5AQ9Y689 179 aa13.01□□□□□ -0.33
VPS33A-202ENST00000451053 SCN8AQ9UQD0 1980 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 H0Y8X5 98 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 AVILO75366 819 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 LMNAP02545 664 aaKnown RBP13□□□□□ -0.33
VPS33A-202ENST00000451053 WNT1P04628 370 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 PCCBP05166 539 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 MLNP12872 115 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 H2AFXP16104 143 aaPredicted RBP13□□□□□ -0.33
VPS33A-202ENST00000451053 BPIP17213 487 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 MPLP40238 635 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 SPINT3P49223 89 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 SESN2P58004 480 aaPredicted RBP13□□□□□ -0.33
VPS33A-202ENST00000451053 SEPT6Q14141 434 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 LRRC14Q15048 493 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 TAF1AQ15573 450 aaPredicted RBP13□□□□□ -0.33
VPS33A-202ENST00000451053 CCDC6Q16204 474 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 HIF1AQ16665 826 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 CCDC38Q502W7 563 aa13□□□□□ -0.33
VPS33A-202ENST00000451053 LRRC8BQ6P9F7 803 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms