RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 KBTBD3Q8NAB2 608 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 LRRC8CQ8TDW0 803 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 HVCN1Q96D96 273 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 CDCA5Q96FF9 252 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 PLEKHA4Q9H4M7 779 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 PPP1R3EQ9H7J1 279 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 HINT3Q9NQE9 182 aaKnown RBP3.33□□□□□ -1.88
CLK1-204ENST00000432425 SMCHD1A6NHR9 2005 aa3.33□□□□□ -1.88
CLK1-204ENST00000432425 A0A1W2PS18 150 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 RRN3P2A6NIE6 340 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 USP17L23D6RBM5 183 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 TAF4O00268 1085 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 P2RY10O00398 339 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 HOXB5P09067 269 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 CDH1P12830 882 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 BDKRB2P30411 391 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 FMO5P49326 533 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 CLCN3P51790 818 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 HNRNPH2P55795 449 aaKnown RBP3.32□□□□□ -1.88
CLK1-204ENST00000432425 ZRSR2Q15696 482 aaKnown RBP3.32□□□□□ -1.88
CLK1-204ENST00000432425 PMS2CLQ68D20 193 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 CHERPQ8IWX8 916 aaKnown RBP3.32□□□□□ -1.88
CLK1-204ENST00000432425 CPXCR1Q8N123 301 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 METTL27Q8N6F8 245 aaPredicted RBP3.32□□□□□ -1.88
CLK1-204ENST00000432425 IL17RCQ8NAC3 791 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 BBS10Q8TAM1 723 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 EVI5LQ96CN4 794 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 PSMD1Q99460 953 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 IFIH1Q9BYX4 1025 aaKnown RBP3.32□□□□□ -1.88
CLK1-204ENST00000432425 TKTL2Q9H0I9 626 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 PLEKHA5Q9HAU0 1116 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 LUZP4Q9P127 313 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 BCCIPQ9P287 314 aaKnown RBP eCLIP3.32□□□□□ -1.88
CLK1-204ENST00000432425 ZNF711Q9Y462 761 aa3.32□□□□□ -1.88
CLK1-204ENST00000432425 PDS5AQ29RF7 1337 aaKnown RBP3.32□□□□□ -1.88
CLK1-204ENST00000432425 ASPDHA6ND91 283 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 PLEKHD1A6NEE1 506 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 LRRC53A6NM62 1247 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 HOXC11O43248 304 aaPredicted RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 XBP1P17861 261 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 S1PR1P21453 382 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 DDIT3P35638 169 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 CTCFP49711 727 aaPredicted RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 NEXNQ0ZGT2 675 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 DHX8Q14562 1220 aaKnown RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 BAK1Q16611 211 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 FAM69AQ5T7M9 428 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 PLEKHA7Q6IQ23 1121 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 TRNP1Q6NT89 227 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 SLC46A3Q7Z3Q1 461 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 KMT5CQ86Y97 462 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 WDR63Q8IWG1 891 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.31□□□□□ -1.88
CLK1-204ENST00000432425 RNF113BQ8IZP6 322 aaKnown RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 DMBX1Q8NFW5 382 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 SLC20A1Q8WUM9 679 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 PABPC5Q96DU9 382 aaKnown RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 SLC41A2Q96JW4 573 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 MTERF1Q99551 399 aaKnown RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 FAM110AQ9BQ89 295 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 CSTL1Q9H114 145 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 GGA3Q9NZ52 723 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 SARDHQ9UL12 918 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 PADI1Q9ULC6 663 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 AAR2Q9Y312 384 aaKnown RBP3.31□□□□□ -1.88
CLK1-204ENST00000432425 LOXL2Q9Y4K0 774 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 UTYO14607 1347 aa3.31□□□□□ -1.88
CLK1-204ENST00000432425 LDLRAD4O15165 306 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 NCAM2O15394 837 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 CDAP32320 146 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 ABCD1P33897 745 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 PDE1BQ01064 536 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 DMP1Q13316 513 aaPredicted RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 GPATCH4Q5T3I0 446 aaKnown RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 GFRALQ6UXV0 394 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 QSOX2Q6ZRP7 698 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 SLC26A9Q7LBE3 791 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 TMEM219Q86XT9 240 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 CADM4Q8NFZ8 388 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 OR2AK2Q8NG84 335 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 DUSP19Q8WTR2 217 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 HTRA1Q92743 480 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 RNF125Q96EQ8 232 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 SAAL1Q96ER3 474 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 CMKLR1Q99788 373 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 GLIS2Q9BZE0 524 aaPredicted RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 KCNN2Q9H2S1 579 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 ZNF334Q9HCZ1 680 aaPredicted RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 KLHL1Q9NR64 748 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 RALYQ9UKM9 306 aaKnown RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 FAM72CH0Y354 149 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 IFNL4K9M1U5 179 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 CAPN9O14815 690 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 TPD52L2O43399 206 aaKnown RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 SLC22A3O75751 556 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 HLA-DOBP13765 273 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 ITGA2P17301 1181 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 CPOXP36551 454 aa3.3□□□□□ -1.88
CLK1-204ENST00000432425 CSNK2A1P68400 391 aaPredicted RBP3.3□□□□□ -1.88
CLK1-204ENST00000432425 PITX1P78337 314 aaPredicted RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms