RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CYP4F2P78329 520 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 MRPS35P82673 323 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 OLIG2Q13516 323 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 MED22Q15528 200 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TAF11Q15544 211 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ZKSCAN8Q15776 578 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 C15orf59Q2T9L4 293 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 EDRF1Q3B7T1 1238 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ANXA2RQ3ZCQ2 193 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 C5orf22Q49AR2 442 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 USP39Q53GS9 565 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TCP11X2Q5H9J9 407 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM31Q5JXX7 168 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 HECTD3Q5T447 861 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 UBAP2Q5T6F2 1119 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 C1QTNF12Q5T7M4 302 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 LCE4AQ5TA78 99 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 JADE1Q6IE81 842 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ZNF585AQ6P3V2 769 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM65Q6PI78 240 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 CHST9Q7L1S5 443 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 SLC29A4Q7RTT9 530 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 PEG10Q86TG7 708 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 RFX6Q8HWS3 928 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 UEVLDQ8IX04 471 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 HACE1Q8IYU2 909 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 POMGNT2Q8NAT1 580 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 DNAAF1Q8NEP3 725 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 FAM110DQ8TAY7 271 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 HDAC7Q8WUI4 952 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 LINC00476Q8WZB0 136 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 NELL1Q92832 810 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 DVL3Q92997 716 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 PRMT6Q96LA8 375 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 BBC3Q96PG8 261 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 IFT27Q9BW83 186 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 GATA5Q9BWX5 397 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 FTOQ9C0B1 505 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM39BQ9GZU3 492 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 NUAK2Q9H093 628 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 OR10A4Q9H209 315 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ALDH8A1Q9H2A2 487 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 CD209Q9NNX6 404 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ASAH2Q9NR71 780 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ARL15Q9NXU5 204 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ASIC5Q9NY37 505 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 MRPL15Q9P015 296 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 DLGAP2Q9P1A6 1054 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 LRIT1Q9P2V4 623 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 RAPGEFL1Q9UHV5 662 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 HAO1Q9UJM8 370 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TNFSF13BQ9Y275 285 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 REXO2Q9Y3B8 237 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 UTYO14607 1347 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 ALPK3Q96L96 1907 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 MAST2Q6P0Q8 1798 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 A0A1W2PQ09 198 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 TP73O15350 636 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 FRAT2O75474 233 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 GJB3O75712 270 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 ESRRBO95718 433 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 LCKP06239 509 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 CHRM5P08912 532 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 QDPRP09417 244 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 PRR35P0CG20 571 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 SCG2P13521 617 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 RARGP13631 454 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 DRD4P21917 467 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 MCM3P25205 808 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 GCH1P30793 250 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 CDAP32320 146 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 GABPB1Q06547 395 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 LRMPQ12912 555 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 PRPF4BQ13523 1007 aaKnown RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 PTPAQ15257 358 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 RNPS1Q15287 305 aaKnown RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 KYNUQ16719 465 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM266Q2M3C6 531 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 C10orf76Q5T2E6 689 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 LRCH2Q5VUJ6 765 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 FKBP1CQ5VVH2 108 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM268Q5VZI3 342 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 CEP85Q6P2H3 762 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 TRIM72Q6ZMU5 477 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 RNF207Q6ZRF8 634 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 C15orf52Q6ZUT6 534 aaKnown RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 GRASPQ7Z6J2 395 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 MRGPREQ86SM8 312 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 LCORLQ8N3X6 602 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 PROKR1Q8TCW9 393 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 ACTRT2Q8TDY3 377 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 PRPF31Q8WWY3 499 aaKnown RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 ZKSCAN4Q969J2 545 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 TEKT1Q969V4 418 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 ZNF764Q96H86 408 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 SPATA17Q96L03 361 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 CCDC17Q96LX7 622 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 FIZ1Q96SL8 496 aa4.23□□□□□ -1.73
HMGB3-203ENST00000430118 MYCBPQ99417 103 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-203ENST00000430118 ADPGKQ9BRR6 497 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms