RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TNS4Q8IZW8 715 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 SMG8Q8ND04 991 aaKnown RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 PNPLA8Q9NP80 782 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ATP13A2Q9NQ11 1180 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ASAH2Q9NR71 780 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 SLC7A8Q9UHI5 535 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 RBBP6Q7Z6E9 1792 aaKnown RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 RAB19A4D1S5 217 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 OR3A3P47888 321 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 BMXP51813 675 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ARHGDIAP52565 204 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ZNF143P52747 638 aaPredicted RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 UBE3AQ05086 875 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 ORC1Q13415 861 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 KCTD19Q17RG1 926 aaPredicted RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 VARS2Q5ST30 1063 aaKnown RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 CES5AQ6NT32 575 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 DENND1BQ6P3S1 775 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 BEND5Q7L4P6 421 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 POLNQ7Z5Q5 900 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 SLC4A11Q8NBS3 891 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 SPOCK2Q92563 424 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 TMIGD2Q96BF3 282 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 QKIQ96PU8 341 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP54-205ENST00000424265 IKZF4Q9H2S9 585 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 CDHR5Q9HBB8 845 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 SIX2Q9NPC8 291 aa9.82□□□□□ -0.84
USP54-205ENST00000424265 AFF4Q9UHB7 1163 aaKnown RBP9.82□□□□□ -0.84
USP54-205ENST00000424265 TMEM189-UBE2V1I3L0A0 370 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 NRP1O14786 923 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 TNFRSF21O75509 655 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 NAGAP17050 411 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SSTR3P32745 418 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 EIF3EP60228 445 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 ZNF211Q13398 564 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 TIGD7Q6NT04 549 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 CGB2Q6NT52 195 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 HDDC2Q7Z4H3 204 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 WNT8BQ93098 351 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 MLPHQ9BV36 600 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 CDADC1Q9BWV3 514 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ULBP1Q9BZM6 244 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 POLR1BQ9H9Y6 1135 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ABCB10Q9NRK6 738 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PCDH10Q9P2E7 1040 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 KLHL8Q9P2G9 620 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 USP18Q9UMW8 372 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 DNAJB2P25686 324 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SLC26A3P40879 764 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 C21orf62-AS1Q17RA5 79 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 HECTD3Q5T447 861 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 LHX8Q68G74 356 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 DUPD1Q68J44 220 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 C15orf39Q6ZRI6 1047 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PSTKQ8IV42 348 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 PDIK1LQ8N165 341 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ADCY4Q8NFM4 1077 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ZNF516Q92618 1163 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PTCD3Q96EY7 689 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 SIPA1Q96FS4 1042 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ALPK1Q96QP1 1244 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SIK2Q9H0K1 926 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 AGO3Q9H9G7 860 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 COPS7BQ9H9Q2 264 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 PCDHGA10Q9Y5H3 936 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 E5RJQ4 531 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PHGDHO43175 533 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 CLPXO76031 633 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 CD53P19397 219 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 F8A1P23610 371 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PRDX6P30041 224 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 TBX4P57082 545 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 MRPS5P82675 430 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 SKIV2LQ15477 1246 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 BRMS1LQ5PSV4 323 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SULT1C3Q6IMI6 304 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ATPAF2Q8N5M1 289 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ZNF420Q8TAQ5 688 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 HM13Q8TCT9 377 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 USP13Q92995 863 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 APOL5Q9BWW9 433 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 MAGEB5Q9BZ81 275 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 COG4Q9H9E3 785 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 LRRC4CQ9HCJ2 640 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ACAD8Q9UKU7 415 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 SESN1Q9Y6P5 492 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 EPHB6O15197 1021 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 APOA4P06727 396 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 CKMP06732 381 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 TGM2P21980 687 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 MMP8P22894 467 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ATP5C1P36542 298 aaKnown RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 MAGEA11P43364 429 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 HSD17B7P56937 341 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 S100A12P80511 92 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 ZNF267Q14586 743 aaPredicted RBP9.81□□□□□ -0.84
USP54-205ENST00000424265 ZFP1Q6P2D0 407 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 CASC4Q6P4E1 433 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 C16orf62Q7Z3J2 963 aa9.81□□□□□ -0.84
USP54-205ENST00000424265 PM20D2Q8IYS1 436 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms