RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CDKN2AIPNLQ96HQ2 116 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 NECAB3Q96P71 396 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 GABRG3Q99928 467 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 DHRS4Q9BTZ2 278 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SLC17A6Q9P2U8 582 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 FKBPLQ9UIM3 349 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SARDHQ9UL12 918 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SLC30A1Q9Y6M5 507 aa17.13■□□□□ 0.33
CCDC28B-202ENST00000421922 SCN8AQ9UQD0 1980 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 CCDC162PA2VCL2 907 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 SNRPAP09012 282 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 PMLP29590 882 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 MC4RP32245 332 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 ARCN1P48444 511 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 ARSDP51689 593 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 SEMG2Q02383 582 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 PTPRRQ15256 657 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 AARS2Q5JTZ9 985 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 KIAA0408Q6ZU52 694 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 ERN2Q76MJ5 926 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 TSPAN33Q86UF1 283 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 CNTN4Q8IWV2 1026 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 OR2T3Q8NH03 318 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 RPLP0P6Q8NHW5 317 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 GANCQ8TET4 914 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 ARRDC3Q96B67 414 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 AGAP2Q99490 1192 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 RSPH9Q9H1X1 276 aaPredicted RBP17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 RAD18Q9NS91 495 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 IL17CQ9P0M4 197 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 SENP1Q9P0U3 644 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 GGT7Q9UJ14 662 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 APPL1Q9UKG1 709 aa17.12■□□□□ 0.33
CCDC28B-202ENST00000421922 ZNF106Q9H2Y7 1883 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 ANTXRLA6NF34 631 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 CD3EAPO15446 510 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 UGT1A9O60656 530 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 FAM155BO75949 473 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 C1QAP02745 245 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 MT-ND3P03897 115 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 DNTTP04053 509 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 ELFN1P0C7U0 828 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 C5AR1P21730 350 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 CD72P21854 359 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 ARNTP27540 789 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 SPAM1P38567 509 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 SLC1A2P43004 574 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 MAGOHP61326 146 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 SATB1Q01826 763 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 SFSWAPQ12872 951 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 ILF2Q12905 390 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 CST6Q15828 149 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 ZRANB3Q5FWF4 1079 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 IER5LQ5T953 404 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 DPPA4Q7L190 304 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 SRRM1Q8IYB3 904 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 RAB7BQ96AH8 199 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 VOPP1Q96AW1 172 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 C19orf43Q9BQ61 176 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 SUDS3Q9H7L9 328 aaPredicted RBP17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 UGT1A7Q9HAW7 530 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 UGT1A10Q9HAW8 530 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 UGT1A8Q9HAW9 530 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 OGFRQ9NZT2 677 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 FBXO5Q9UKT4 447 aa17.11■□□□□ 0.33
CCDC28B-202ENST00000421922 XIRP2A4UGR9 3374 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 A0A0U1RQS6 177 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 OR51F1A6NGY5 319 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 TRIM49D1C9J1S8 452 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 BMP1P13497 986 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 ADRB3P13945 408 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 ITGALP20701 1170 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 OGNP20774 298 aaKnown RBP17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 HOXD11P31277 338 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 HPDP32754 393 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 PPARGP37231 505 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 MMP12P39900 470 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 CD151P48509 253 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 CTBP1Q13363 440 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 CCINQ13939 588 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 TTC31Q49AM3 519 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 C2CD4AQ8NCU7 369 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 ATXN7L3BQ96GX2 97 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 SMC6Q96SB8 1091 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 TTC1Q99614 292 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 RBBP8Q99708 897 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 OMDQ99983 421 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 HDAC8Q9BY41 377 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 VPS9D1Q9Y2B5 631 aa17.1■□□□□ 0.33
CCDC28B-202ENST00000421922 GLYATL1P3A0A0U1RQE8 302 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 H7C0S8 307 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 MID1O15344 667 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 LHCGRP22888 699 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 PTPN5P54829 565 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 MPP1Q00013 466 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 CACNG1Q06432 222 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 BMPR2Q13873 1038 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 UBXN2BQ14CS0 331 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 MROH9Q5TGP6 573 aa17.09■□□□□ 0.33
CCDC28B-202ENST00000421922 FAM151BQ6UXP7 276 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms