RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GPR78Q96P69 363 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 SP110Q9HB58 689 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 TLR8Q9NR97 1041 aaKnown RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 NDFIP2Q9NV92 336 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 NMRK1Q9NWW6 199 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 MPP6Q9NZW5 540 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 ARHGAP26Q9UNA1 814 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 YIPF1Q9Y548 306 aa14.85□□□□□ -0.03
USP4-203ENST00000415188 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.85□□□□□ -0.03
USP4-203ENST00000415188 VPS13AQ96RL7 3174 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 A0A088AWK7 358 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 PROB1E7EW31 1015 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 GOLGA8TH3BQL2 631 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 TK2O00142 265 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SLC7A4O43246 635 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 MOSPD3O75425 235 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 IGLV3-27P01718 113 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SBK3P0C264 359 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 COX4I1P13073 169 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 GLULP15104 373 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 GJA1P17302 382 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 NCF2P19878 526 aaPredicted RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 GMPRP36959 345 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SLC26A3P40879 764 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 LEPRP48357 1165 aaKnown RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 KLF10Q13118 480 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 BLMHQ13867 455 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SEPT6Q14141 434 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 MLF2Q15773 248 aaPredicted RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 SLC14A2Q15849 920 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 CNGA3Q16281 694 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SLC44A4Q53GD3 710 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SH2D4BQ5SQS7 431 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 ZNF470Q6ECI4 717 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 PGM2L1Q6PCE3 622 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 APLFQ8IW19 511 aaPredicted RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 DENND6AQ8IWF6 608 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 FSTL5Q8N475 847 aaPredicted RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 AFAP1L2Q8N4X5 818 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SCG3Q8WXD2 468 aaKnown RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 FBXO32Q969P5 355 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 HMCESQ96FZ2 354 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 CEP295NLQ96MC4 621 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 ZNF512Q96ME7 567 aaPredicted RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 ZSWIM3Q96MP5 696 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 PANX3Q96QZ0 392 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 CDK5RAP1Q96SZ6 601 aaKnown RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 NT5MQ9NPB1 228 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP4-203ENST00000415188 DLGAP2Q9P1A6 1054 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 XPR1Q9UBH6 696 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 CORO1CQ9ULV4 474 aaPredicted RBP14.84□□□□□ -0.03
USP4-203ENST00000415188 LRCH1Q9Y2L9 728 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 SIT1Q9Y3P8 196 aa14.84□□□□□ -0.03
USP4-203ENST00000415188 MAP3K7O43318 606 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 ECI2O75521 394 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 PIGNO95427 931 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 THRAP10827 490 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 FCARP24071 287 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 ATP5F1P24539 256 aaPredicted RBP14.83□□□□□ -0.03
USP4-203ENST00000415188 MPSTP25325 297 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 STARD6P59095 220 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 SATB1Q01826 763 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 USP4Q13107 963 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 DUSP4Q13115 394 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 CTBP1Q13363 440 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 FAM83EQ2M2I3 478 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 SLC9B1Q4ZJI4 515 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 FAM78AQ5JUQ0 283 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 AGAP9Q5VTM2 703 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 KLC3Q6P597 504 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 ELMOD1Q8N336 334 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 TTC9BQ8N6N2 239 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 ATAD1Q8NBU5 361 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 PJA1Q8NG27 643 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 ZNF599Q96NL3 588 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 TRPC7Q9HCX4 862 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 NDE1Q9NXR1 346 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 CPSF2Q9P2I0 782 aaKnown RBP14.83□□□□□ -0.03
USP4-203ENST00000415188 SLC2A6Q9UGQ3 507 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 RIMKLBQ9ULI2 386 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 MAFFQ9ULX9 164 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 PRPF19Q9UMS4 504 aaKnown RBP14.83□□□□□ -0.03
USP4-203ENST00000415188 CDYLQ9Y232 598 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 SLC27A5Q9Y2P5 690 aa14.83□□□□□ -0.03
USP4-203ENST00000415188 MTF2Q9Y483 593 aaPredicted RBP14.83□□□□□ -0.03
USP4-203ENST00000415188 MTMR11A4FU01 709 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 TRPC5OSA6NMA1 111 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ZNF197O14709 1029 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 DLX3O60479 287 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 SOAT2O75908 522 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 RBP1P09455 135 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ANPEPP15144 967 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 ITGAXP20702 1163 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 CD72P21854 359 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 TAS2R39P59534 338 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 MRPS35P82673 323 aaKnown RBP14.82□□□□□ -0.04
USP4-203ENST00000415188 EFEMP1Q12805 493 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 GPR17Q13304 367 aa14.82□□□□□ -0.04
USP4-203ENST00000415188 GRM2Q14416 872 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms