RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 BPIFB4P59827 614 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 IRX4P78413 519 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 BASP1P80723 227 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 HPCAP84074 193 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 ALDH6A1Q02252 535 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 TRIP4Q15650 581 aaPredicted RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 SLC1A5Q15758 541 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF805Q5CZA5 627 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 SPOPLQ6IQ16 392 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 KLHDC10Q6PID8 442 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 CHRDL2Q6WN34 429 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 DDX53Q86TM3 631 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 BPHLQ86WA6 291 aaPredicted RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 LRRC6Q86X45 466 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 METTL23Q86XA0 190 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 TUSC5Q8IXB3 177 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 ZCCHC9Q8N567 271 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF564Q8TBZ8 553 aaPredicted RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 PRICKLE1Q96MT3 831 aaPredicted RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 SIKE1Q9BRV8 207 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 NFKBIZQ9BYH8 718 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 NXF3Q9H4D5 531 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 NRDE2Q9H7Z3 1164 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 AGO3Q9H9G7 860 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 TMEM39AQ9NV64 488 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 ETNK2Q9NVF9 386 aa9.43□□□□□ -0.9
SNHG3-201ENST00000413987 DNAJC17Q9NVM6 304 aaKnown RBP9.43□□□□□ -0.9
SNHG3-201ENST00000413987 PSMD9O00233 223 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 CPA3P15088 417 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 PTPN5P54829 565 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 CARD18P57730 90 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 ACTR3P61158 418 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 MRPS6P82932 125 aaKnown RBP9.42□□□□□ -0.9
SNHG3-201ENST00000413987 ARF5P84085 180 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 TDRD10Q5VZ19 366 aaKnown RBP9.42□□□□□ -0.9
SNHG3-201ENST00000413987 SV2AQ7L0J3 742 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF554Q86TJ5 538 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF410Q86VK4 478 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 ARHGEF19Q8IW93 802 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 KIAA2013Q8IYS2 634 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 C7orf57Q8NEG2 295 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 PPP1R14AQ96A00 147 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 C9orf72Q96LT7 481 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 DCLK3Q9C098 648 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 PHACTR1Q9C0D0 580 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 SERHL2Q9H4I8 314 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 STN1Q9H668 368 aaKnown RBP9.42□□□□□ -0.9
SNHG3-201ENST00000413987 OPA3Q9H6K4 179 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 PSMC3IPQ9P2W1 217 aaPredicted RBP9.42□□□□□ -0.9
SNHG3-201ENST00000413987 SLC39A10Q9ULF5 831 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 PAIP2BQ9ULR5 123 aaKnown RBP9.42□□□□□ -0.9
SNHG3-201ENST00000413987 TNFSF13BQ9Y275 285 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 WASF2Q9Y6W5 498 aa9.42□□□□□ -0.9
SNHG3-201ENST00000413987 A0A0G2JND7 137 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 TTLL8A6PVC2 850 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 PRR5-ARHGAP8B1AHC4 643 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 OGTO15294 1046 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 CALCAP01258 141 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 IL1BP01584 269 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 NFICP08651 508 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 STAG3L1P0CL83 205 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 GAAP10253 952 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 UQCRBP14927 111 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 CSTF2P33240 577 aaKnown RBP eCLIP9.41□□□□□ -0.98e-46■■■■■ 44.8
SNHG3-201ENST00000413987 EIF2DP41214 584 aaKnown RBP9.41□□□□□ -0.9
SNHG3-201ENST00000413987 SLC1A1P43005 524 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 INHBCP55103 352 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 PRMT2P55345 433 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 MAMLD1Q13495 774 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 LRIT3Q3SXY7 679 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 GLRA4Q5JXX5 417 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 C1orf185Q5T7R7 199 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF618Q5T7W0 954 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 SLFN12LQ6IEE8 588 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 PAPD4Q6PIY7 484 aaKnown RBP9.41□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF227Q86WZ6 799 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 LMO3Q8TAP4 145 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 TMEM174Q8WUU8 243 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 ZNF566Q969W8 418 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 PDLIM5Q96HC4 596 aaKnown RBP9.41□□□□□ -0.9
SNHG3-201ENST00000413987 RBM15Q96T37 977 aaKnown RBP eCLIP9.41□□□□□ -0.91e-8■■□□□ 14.3
SNHG3-201ENST00000413987 GPR63Q9BZJ6 419 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 MANSC1Q9H8J5 431 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 PNPLA8Q9NP80 782 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 ACP6Q9NPH0 428 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 RHBDL2Q9NX52 303 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 HSFX1Q9UBD0 423 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 CHMP2BQ9UQN3 213 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 PIAS3Q9Y6X2 628 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 AQP12BA6NM10 295 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 KBTBD13C9JR72 458 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 POC1B-GALNT4F8VUJ3 575 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 RNASEH1O60930 286 aaKnown RBP9.41□□□□□ -0.9
SNHG3-201ENST00000413987 TM7SF2O76062 418 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 IDO1P14902 403 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 ETS2P15036 469 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 GCAP28676 217 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 CD52P31358 61 aa9.41□□□□□ -0.9
SNHG3-201ENST00000413987 ADARP55265 1226 aaKnown RBP9.41□□□□□ -0.9
SNHG3-201ENST00000413987 SNRPFP62306 86 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms