RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 ILF3Q12906 894 aaKnown RBP eCLIP17.27■□□□□ 0.362e-7■■□□□ 14.5
PHRF1-202ENST00000413872 TSNQ15631 228 aaKnown RBP17.27■□□□□ 0.36
PHRF1-202ENST00000413872 OR14C36Q8NHC7 312 aa17.27■□□□□ 0.36
PHRF1-202ENST00000413872 ITCHQ96J02 903 aa17.27■□□□□ 0.36
PHRF1-202ENST00000413872 ZMYND8Q9ULU4 1186 aaPredicted RBP17.27■□□□□ 0.36
PHRF1-202ENST00000413872 TLR6Q9Y2C9 796 aa17.27■□□□□ 0.36
PHRF1-202ENST00000413872 TCAF1Q9Y4C2 921 aa17.27■□□□□ 0.36
PHRF1-202ENST00000413872 CYP2R1Q6VVX0 501 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 CCDC185Q8N715 623 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 ACDQ96AP0 544 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 SPAG4Q9NPE6 437 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 CNTN3Q9P232 1028 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 FNIP2Q9P278 1114 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 KLHL3Q9UH77 587 aa17.27■□□□□ 0.35
PHRF1-202ENST00000413872 DHX15O43143 795 aaKnown RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 CLPTM1O96005 669 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 LMO2P25791 158 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 MAGEA10P43363 369 aaPredicted RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 TTMPQ5BVD1 217 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 CTU1Q7Z7A3 348 aaKnown RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 GATAD2AQ86YP4 633 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 OR7D4Q8NG98 312 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 C2P06681 752 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 SERPINB1P30740 379 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 SOWAHAQ2M3V2 549 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 DRICH1Q6PGQ1 229 aaPredicted RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 NPLOC4Q8TAT6 608 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 GDPD5Q8WTR4 605 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 HERVK_113Q902F9 699 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 NACC2Q96BF6 587 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 C3orf14Q9HBI5 128 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 EIF2B3Q9NR50 452 aaKnown RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 SLC9A8Q9Y2E8 581 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 CICQ96RK0 1608 aaPredicted RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 RBM47A0AV96 593 aaKnown RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 NR2F1P10589 423 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 COX4I1P13073 169 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 DSC2Q02487 901 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 VN1R5Q7Z5H4 357 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 PCDH12Q9NPG4 1184 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 PEX1O43933 1283 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 SERPINB7O75635 380 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 CBX6O95503 412 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 NDUFA9Q16795 377 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 GDF6Q6KF10 455 aaPredicted RBP17.26■□□□□ 0.35
PHRF1-202ENST00000413872 FAM20CQ8IXL6 584 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 DAW1Q8N136 415 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 KLHL23Q8NBE8 558 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 LRRN4Q8WUT4 740 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 DEPDC7Q96QD5 511 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 ROGDIQ9GZN7 287 aa17.26■□□□□ 0.35
PHRF1-202ENST00000413872 H0Y858 1186 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 KCNE1P15382 129 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 GJA9P57773 515 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 RNASEH2BQ5TBB1 312 aaKnown RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 RNF148Q8N7C7 305 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 GPR156Q8NFN8 814 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 KCTD13Q8WZ19 329 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 HMCESQ96FZ2 354 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 LRRC4CQ9HCJ2 640 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 COPG2Q9UBF2 871 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 hCG_2014768A0A024R1R8 64 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 SERPINA6P08185 405 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ACRP10323 421 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 RPL17P18621 184 aaKnown RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 CRHR1P34998 444 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 PNLIPRP1P54315 467 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 LAPTM5Q13571 262 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ZNF605Q86T29 641 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ULK2Q8IYT8 1036 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ING5Q8WYH8 240 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ZC4H2Q9NQZ6 224 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 NUDT4Q9NZJ9 180 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 MRTO4Q9UKD2 239 aaKnown RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 COG5Q9UP83 839 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 IPO13O94829 963 aaKnown RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 RANBP1P43487 201 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 PSME3P61289 254 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 FSTL1Q12841 308 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 TEAD4Q15561 434 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ATP13A5Q4VNC0 1218 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 SLC30A9Q6PML9 568 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 EPHX4Q8IUS5 362 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 PCDH20Q8N6Y1 951 aaKnown RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 OR52L1Q8NGH7 329 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ZNF599Q96NL3 588 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 GPN3Q9UHW5 284 aaPredicted RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ATP6V1HQ9UI12 483 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 R3HDM2Q9Y2K5 976 aaKnown RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 ZNF536O15090 1300 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 YJEFN3A6XGL0 299 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 TGDSO95455 350 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 CCDC159P0C7I6 412 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 SSR2P43308 183 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 CDCA2Q69YH5 1023 aaPredicted RBP17.25■□□□□ 0.35
PHRF1-202ENST00000413872 SPATA19Q7Z5L4 167 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 NIPA2Q8N8Q9 360 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 CPT1BQ92523 772 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 PPCDCQ96CD2 204 aa17.25■□□□□ 0.35
PHRF1-202ENST00000413872 TXNRD2Q9NNW7 524 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms