RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 GALNT3Q14435 633 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 E2F5Q15329 346 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 MAPRE2Q15555 327 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 NCEH1Q6PIU2 408 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 C16orf89Q6UX73 402 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 Q6ZNB5 142 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 ULK2Q8IYT8 1036 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 LSMEM2Q8N112 164 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 NKAPQ8N5F7 415 aaKnown RBP13.57□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF557Q8N988 423 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-205ENST00000410093 KDM1BQ8NB78 822 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 TXNDC5Q8NBS9 432 aaKnown RBP13.57□□□□□ -0.24
LIMS1-205ENST00000410093 MRPS31Q92665 395 aaKnown RBP13.57□□□□□ -0.24
LIMS1-205ENST00000410093 TMA16Q96EY4 203 aaKnown RBP13.57□□□□□ -0.24
LIMS1-205ENST00000410093 SERPINI1Q99574 410 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 C2orf49Q9BVC5 232 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-205ENST00000410093 ANGPTL2Q9UKU9 493 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 RAI2Q9Y5P3 530 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 ARL5AQ9Y689 179 aa13.57□□□□□ -0.24
LIMS1-205ENST00000410093 LCHNA4D1U4 455 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 A8MT66 165 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 LILRB3O75022 631 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 NDUFS3O75489 264 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 ZMPSTE24O75844 475 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 PSMG1O95456 288 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 CHRNGP07510 517 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 COX4I1P13073 169 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 MPSTP25325 297 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 CDC25CP30307 473 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 INHBCP55103 352 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 AP2B1P63010 937 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 BTKQ06187 659 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 PDAP1Q13442 181 aaKnown RBP13.56□□□□□ -0.24
LIMS1-205ENST00000410093 CCDC6Q16204 474 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 SLC9B1Q4ZJI4 515 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 MPPE1Q53F39 396 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 UGT3A1Q6NUS8 523 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 CERS6Q6ZMG9 384 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 ATG14Q6ZNE5 492 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 FRMD7Q6ZUT3 714 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 HTR3DQ70Z44 454 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 ISCA2Q86U28 154 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 ELMOD1Q8N336 334 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 CCNYL1Q8N7R7 359 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMS1-205ENST00000410093 ZFRQ96KR1 1074 aaKnown RBP13.56□□□□□ -0.24
LIMS1-205ENST00000410093 GCNAQ96QF7 691 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 NDNQ99608 321 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 TTC1Q99614 292 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 RAD9AQ99638 391 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 FEM1AQ9BSK4 669 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 DERL2Q9GZP9 239 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 MAGEE1Q9HCI5 957 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 MRPL40Q9NQ50 206 aaKnown RBP13.56□□□□□ -0.24
LIMS1-205ENST00000410093 PFDN4Q9NQP4 134 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 GKN1Q9NS71 199 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 DNMT3BQ9UBC3 853 aaKnown RBP13.56□□□□□ -0.24
LIMS1-205ENST00000410093 ZDHHC2Q9UIJ5 367 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 VPS28Q9UK41 221 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 L3MBTL1Q9Y468 752 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 LRRC42Q9Y546 428 aa13.56□□□□□ -0.24
LIMS1-205ENST00000410093 DCXO43602 365 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 TBL1XO60907 577 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 TMCC1O94876 653 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 FGF4P08620 206 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 CTSAP10619 480 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 CD1DP15813 335 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF37AP17032 561 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-205ENST00000410093 HDCP19113 662 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 PTPN5P54829 565 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 CDKN2DP55273 166 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 HERVK_113P63132 956 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 DEFB103AP81534 67 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 ARF5P84085 180 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 SLC34A1Q06495 639 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 RAD51Q06609 339 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 CDC16Q13042 620 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 CDH18Q13634 790 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF460Q14592 562 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 LSM12Q3MHD2 195 aaKnown RBP13.55□□□□□ -0.24
LIMS1-205ENST00000410093 LYPLAL1Q5VWZ2 237 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 FAM117BQ6P1L5 589 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 ADGRG6Q86SQ4 1221 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.55□□□□□ -0.24
LIMS1-205ENST00000410093 CHCHD4Q8N4Q1 142 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 STAG3L4Q8TBR4 150 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 THTPAQ9BU02 230 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 ERVK-6Q9BXR3 956 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF385DQ9H6B1 395 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 MEAF6Q9HAF1 191 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 MARCH4Q9P2E8 410 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-205ENST00000410093 OR51B4Q9Y5P0 310 aa13.55□□□□□ -0.24
LIMS1-205ENST00000410093 MRPL42Q9Y6G3 142 aaKnown RBP13.55□□□□□ -0.24
LIMS1-205ENST00000410093 C2orf78A6NCI8 922 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 AURKAO14965 403 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 STX7O15400 261 aaKnown RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 SOCS5O75159 536 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ENTPD5O75356 428 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 VPS26AO75436 327 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PRLP01236 227 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms