RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 USP10Q14694 798 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 TERF2Q15554 542 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 RBM20Q5T481 1227 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 MRNIPQ6NTE8 343 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 TXNDC11Q6PKC3 985 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 LVRNQ6Q4G3 990 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 CRTC1Q6UUV9 634 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 TIFABQ6ZNK6 161 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 RAPH1Q70E73 1250 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 TTC7BQ86TV6 843 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 CACUL1Q86Y37 369 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 SPNS2Q8IVW8 549 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 CHPFQ8IZ52 775 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 ALKBH8Q96BT7 664 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 SCRN2Q96FV2 425 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 FAM111AQ96PZ2 611 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 HEBP1Q9NRV9 189 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 B4GALT6Q9UBX8 382 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 RIMKLBQ9ULI2 386 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 WDR91A4D1P6 747 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 PHGDHO43175 533 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 ZWINTO95229 277 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 S1PR4O95977 384 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 IL1BP01584 269 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 LHCGRP22888 699 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 XPAP23025 273 aaPredicted RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 NEK3P51956 506 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 SEC24CP53992 1094 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 WDR4P57081 412 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 POLR2LP62875 67 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 IRX4P78413 519 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 PEX6Q13608 980 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 ZNF460Q14592 562 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 CDKN3Q16667 212 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 PREPLQ4J6C6 727 aaPredicted RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 ZNF805Q5CZA5 627 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 PSAPL1Q6NUJ1 521 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 BRAT1Q6PJG6 821 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 KIAA0408Q6ZU52 694 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 NUDT18Q6ZVK8 323 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 TAS2R42Q7RTR8 314 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 SDCCAG8Q86SQ7 713 aaPredicted RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 OR8D1Q8WZ84 308 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 SPOCK2Q92563 424 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 GPR22Q99680 433 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 FAM107BQ9H098 131 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 TMEM245Q9H330 911 aa12.44□□□□□ -0.42
CHMP3-204ENST00000409727 SSU72Q9NP77 194 aaKnown RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 THAP10Q9P2Z0 257 aaPredicted RBP12.44□□□□□ -0.42
CHMP3-204ENST00000409727 MUC22E2RYF6 1773 aaPredicted RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 A0A096LPK6 155 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 UBA6A0AVT1 1052 aaPredicted RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 C16orf96A6NNT2 1141 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 SPECC1L-ADORA2AF8WAN1 911 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 PLK4O00444 970 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 SHOX2O60902 331 aaPredicted RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 DNAJC6O75061 913 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 CTHP32929 405 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 TIE1P35590 1138 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 CCNFP41002 786 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 LEPRP48357 1165 aaKnown RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 CCT5P48643 541 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 IRF9Q00978 393 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 GABPB1Q06547 395 aaPredicted RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 DNAJC3Q13217 504 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 ELAVL3Q14576 367 aaKnown RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 HHATQ5VTY9 493 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 RFLNAQ6ZTI6 216 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 TPRG1Q6ZUI0 275 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 MMAAQ8IVH4 418 aaKnown RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 PIANPQ8IYJ0 282 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 SLC44A3Q8N4M1 653 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 ZNF513Q8N8E2 541 aaPredicted RBP12.43□□□□□ -0.42
CHMP3-204ENST00000409727 PIP4K2CQ8TBX8 421 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 DENND1AQ8TEH3 1009 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 HLA-CQ95604 372 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 PBXIP1Q96AQ6 731 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 FAM136AQ96C01 138 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 SGSM3Q96HU1 749 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 OSBPL1AQ9BXW6 950 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 PCDH12Q9NPG4 1184 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 GRID1Q9ULK0 1009 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 PRUNE2Q8WUY3 3088 aa12.43□□□□□ -0.42
CHMP3-204ENST00000409727 UPK3BL1B0FP48 263 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 UPK3BL2E5RIL1 263 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 HAX1O00165 279 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 PRAMEF1O95521 474 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 PRNPP04156 253 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 CHRM1P11229 460 aaPredicted RBP12.42□□□□□ -0.42
CHMP3-204ENST00000409727 TIMP2P16035 220 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 BPIP17213 487 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 FOXN2P32314 431 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 STC1P52823 247 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 SLC12A2P55011 1212 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 PTSQ03393 145 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 ARHGEF7Q14155 803 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 PON2Q15165 354 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 C2orf27AQ580R0 203 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 IER5LQ5T953 404 aa12.42□□□□□ -0.42
CHMP3-204ENST00000409727 C16orf46Q6P387 395 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms