RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CKMP06732 381 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 NPR2P20594 1047 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 PTPN3P26045 913 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CDH4P55283 916 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 RPL6Q02878 288 aaKnown RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 LIPEQ05469 1076 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF234Q14588 700 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 PDIA6Q15084 440 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CYP2A13Q16696 494 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SH3D19Q5HYK7 790 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SPATA19Q7Z5L4 167 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CNTD1Q8N815 330 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SLC2A14Q8TDB8 520 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SLC22A4Q9H015 551 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 TMLHEQ9NVH6 421 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 NKX1-2Q9UD57 310 aaPredicted RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 AXIN1O15169 862 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ASLP04424 464 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 IFNA16P05015 189 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 USP17L7P0C7H9 530 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 C1orf189Q5VU69 101 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 DET1Q7L5Y6 550 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 RASGEF1CQ8N431 466 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ART5Q96L15 291 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 QRFPRQ96P65 431 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 POLR1EQ9GZS1 481 aaKnown RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SNTG1Q9NSN8 517 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 INTS10Q9NVR2 710 aaKnown RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 PLA2R1Q13018 1463 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 GPR75-ASB3A0A0A6YYF3 556 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ZW10O43264 779 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 THP07101 528 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 RARRES1P49788 294 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 HSPA14Q0VDF9 509 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SNAPC1Q16533 368 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 RBM20Q5T481 1227 aaKnown RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SYT15Q9BQS2 421 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 MUC13Q9H3R2 512 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 A2ML1A8K2U0 1454 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SLC28A2O43868 658 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 MYBPC3Q14896 1274 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CPSF6Q16630 551 aaKnown RBP eCLIP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 TCEAL5Q5H9L2 206 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 GALNT12Q8IXK2 581 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 FAM71AQ8IYT1 594 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CHST13Q8NET6 341 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CYP2W1Q8TAV3 490 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 RAD51AP1Q96B01 352 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF570Q96NI8 536 aa11.84□□□□□ -0.51
SYNPO-202ENST00000394243 SNRNP25Q9BV90 132 aaKnown RBP11.84□□□□□ -0.51
SYNPO-202ENST00000394243 CASTOR2A6NHX0 329 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 PAPSS1O43252 624 aaPredicted RBP11.83□□□□□ -0.51
SYNPO-202ENST00000394243 TBX10O75333 385 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 DNTTP04053 509 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 WEE1P30291 646 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 FMO1Q01740 532 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 TXNDC11Q6PKC3 985 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 DRAXINQ8NBI3 349 aaPredicted RBP11.83□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF607Q96SK3 696 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 FDXACB1Q9BRP7 624 aaPredicted RBP11.83□□□□□ -0.51
SYNPO-202ENST00000394243 PIM2Q9P1W9 311 aa11.83□□□□□ -0.51
SYNPO-202ENST00000394243 TMEM150BA6NC51 233 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 SERPINB7O75635 380 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 PRH1P02810 166 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 GPIP06744 558 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 VARSP26640 1264 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 MAGEA12P43365 314 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF484Q5JVG2 852 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 IRF2BP2Q7Z5L9 587 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZBTB45Q96K62 511 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 EBF2Q9HAK2 575 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 VPS51Q9UID3 782 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ISPDA4D126 451 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 M0QX08 132 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZC3H12AQ5D1E8 599 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 NIPAL1Q6NVV3 410 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 OAFQ86UD1 273 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZZZ3Q8IYH5 903 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 FAM98AQ8NCA5 519 aaKnown RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 TLCD1Q96CP7 247 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 UNC93B1Q9H1C4 597 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF70Q9UC06 446 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 PCDHGC3Q9UN70 934 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZSCAN5BA6NJL1 495 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ANKRD63C9JTQ0 380 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 TEX46H3BTG2 121 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 NOBOXO60393 691 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 UGT2B17O75795 530 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 FABP3P05413 133 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 PRDX6P30041 224 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF143P52747 638 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF267Q14586 743 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 ACAP2Q15057 778 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 INSCQ1MX18 579 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 CTXN3Q4LDR2 81 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 HLA-DQA1Q5Y7H0 255 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 FAM183BPQ6ZVS7 135 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 VANGL1Q8TAA9 524 aaPredicted RBP11.83□□□□□ -0.52
SYNPO-202ENST00000394243 SMARCD1Q96GM5 515 aa11.83□□□□□ -0.52
SYNPO-202ENST00000394243 RHBGQ9H310 441 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms