RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LAMP2P13473 410 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 EZRP15311 586 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 PTPN4P29074 926 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 PMLP29590 882 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 EIF2DP41214 584 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 MAGEA12P43365 314 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 POU4F1Q01851 419 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CTBP1Q13363 440 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 RUNX3Q13761 415 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CTC1Q2NKJ3 1217 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 WLSQ5T9L3 541 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CDHR3Q6ZTQ4 885 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 PTAR1Q7Z6K3 402 aaPredicted RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CILP2Q8IUL8 1156 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 DENND6AQ8IWF6 608 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 OR4K2Q8NGD2 314 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 OR6K2Q8NGY2 324 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CFAP61Q8NHU2 1237 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 TBATAQ96M53 351 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 NSMCE3Q96MG7 304 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 HEPHQ9BQS7 1158 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 FAM96AQ9H5X1 160 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ZDHHC6Q9H6R6 413 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 INTS10Q9NVR2 710 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ELOVL2Q9NXB9 296 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 BAIAP2L1Q9UHR4 511 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 MID2Q9UJV3 735 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CAPN8A6NHC0 703 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 BNIP3LO60238 219 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 PIGNO95427 931 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 GOT2P00505 430 aaKnown RBP18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 AHSGP02765 367 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 COL6A2P12110 1019 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 POU3F3P20264 500 aaPredicted RBP18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 HMGCLP35914 325 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 PPARGP37231 505 aaPredicted RBP18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 KPNA2P52292 529 aaKnown RBP18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 TMPRSS15P98073 1019 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 USP10Q14694 798 aaKnown RBP18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 BRAT1Q6PJG6 821 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 GDPD4Q6W3E5 623 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 RAPH1Q70E73 1250 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 ARMC2Q8NEN0 867 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 HCAR2Q8TDS4 363 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 SKA1Q96BD8 255 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 ASIC4Q96FT7 647 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 ATXN7L3BQ96GX2 97 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 MYADMQ96S97 322 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 TTC1Q99614 292 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 STN1Q9H668 368 aaKnown RBP18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 SLCO3A1Q9UIG8 710 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 SLC39A10Q9ULF5 831 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 MYO9BQ13459 2157 aa18.19■□□□□ 0.5
CCDC88C-203ENST00000389856 FAM95CA0A1B0GW59 222 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 CCDC162PA2VCL2 907 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 H7C0S8 307 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 SNNO75324 88 aaPredicted RBP18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 PRKCGP05129 697 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 APOA4P06727 396 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 STMN1P16949 149 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 PTPN5P54829 565 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 MPP1Q00013 466 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 OCRLQ01968 901 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 TBCCQ15814 346 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 CCDC153Q494R4 210 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 DPY19L3Q6ZPD9 716 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 Q6ZVU0 165 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 MTDHQ86UE4 582 aaKnown RBP18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 CRLF3Q8IUI8 442 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 TTC30BQ8N4P2 665 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 MDGA1Q8NFP4 955 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 OR13C4Q8NGS5 318 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 RFWD2Q8NHY2 731 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 SREK1Q8WXA9 508 aaKnown RBP18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 ECHDC3Q96DC8 303 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 THOC1Q96FV9 657 aaKnown RBP18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 ZFYVE19Q96K21 471 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 MRGPRX3Q96LB0 322 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 LYSMD1Q96S90 227 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 TMEM120AQ9BXJ8 343 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 WWP1Q9H0M0 922 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 PRO3102Q9H379 93 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 ZFYVE1Q9HBF4 777 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 THAP1Q9NVV9 213 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 HEY2Q9UBP5 337 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 KCTD3Q9Y597 815 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 DENND4AQ7Z401 1863 aa18.18■□□□□ 0.5
CCDC88C-203ENST00000389856 A0A087X1B8 175 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 A0A096LPK6 155 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 A0A0G2JND7 137 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 TBX10O75333 385 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 T-ENOLP0DO92 83 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 TTPAP49638 278 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 ARSDP51689 593 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 ZBTB16Q05516 673 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 BST1Q10588 318 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 PDE1CQ14123 709 aaPredicted RBP18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 ZDHHC20Q5W0Z9 365 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 ELMO2Q96JJ3 720 aa18.17■□□□□ 0.5
CCDC88C-203ENST00000389856 TRMT61BQ9BVS5 477 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 160 ms