RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 GFRALQ6UXV0 394 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 MACC1Q6ZN28 852 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 Q6ZSR6 202 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TRPM8Q7Z2W7 1104 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 NT5DC3Q86UY8 548 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 AMIGO1Q86WK6 493 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PLD5Q8N7P1 536 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 OR2T3Q8NH03 318 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FGF11Q92914 225 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FBXL20Q96IG2 436 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FRMD6Q96NE9 622 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 AP1M1Q9BXS5 423 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 EGLN1Q9GZT9 426 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 THAP9Q9H5L6 903 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 NOL11Q9H8H0 719 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 KCNJ16Q9NPI9 418 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SACM1LQ9NTJ5 587 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TLR7Q9NYK1 1049 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 KLRF1Q9NZS2 232 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TBX20Q9UMR3 447 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 C2CD2Q9Y426 696 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PCDHB15Q9Y5E8 787 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 A8MU76 341 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TOR1BO14657 336 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 KIAA0355O15063 1070 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CHADO15335 359 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 BIRC5O15392 142 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 LRP3O75074 770 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FGGP02679 453 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CYP2D6P10635 497 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PTPN1P18031 435 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 CCND3P30281 292 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC8A1P32418 973 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PDK2Q15119 407 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF311Q5JNZ3 666 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 LRRC8BQ6P9F7 803 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TMEM207Q6UWW9 146 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FRMD7Q6ZUT3 714 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 NANOGNBQ7Z5D8 188 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 KBTBD2Q8IY47 623 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CFAP206Q8IYR0 622 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ULK2Q8IYT8 1036 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC25A41Q8N5S1 370 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ASCC1Q8N9N2 400 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.1□□□□□ -1.75
USH2A-202ENST00000366942 OR2T34Q8NGX1 318 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SAAL1Q96ER3 474 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 IGSF21Q96ID5 467 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF333Q96JL9 665 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TBCBQ99426 244 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 UTP23Q9BRU9 249 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 NUDT9Q9BW91 350 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FAM83DQ9H4H8 585 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CDH20Q9HBT6 801 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RRAGDQ9NQL2 400 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 RBM12Q9NTZ6 932 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 GNPTGQ9UJJ9 305 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ARHGAP23Q9P227 1491 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 E9PAM4 449 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC16A3O15427 465 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 B3GALT2O43825 422 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 BRINP1O60477 761 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RFPL1O75677 317 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PCCBP05166 539 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 C5AR1P21730 350 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ADRA1DP25100 572 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DNAJA1P31689 397 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 HPCAL1P37235 193 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GNALP38405 381 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GRM5P41594 1212 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CLNS1AP54105 237 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 SESN2P58004 480 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF200P98182 395 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 SLC29A2Q14542 456 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 GRM7Q14831 915 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 FAM83EQ2M2I3 478 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 KLHL38Q2WGJ6 581 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PDCD4Q53EL6 469 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF618Q5T7W0 954 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 RESP18Q5W5W9 173 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 UNQ9370/PRO34162Q6UXP9 181 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ZNF574Q6ZN55 896 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 C15orf39Q6ZRI6 1047 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 G2E3Q7L622 706 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PPP1R3BQ86XI6 285 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 VSIG1Q86XK7 387 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DDIASQ8IXT1 998 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 EID2Q8N6I1 236 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 PCDH20Q8N6Y1 951 aaKnown RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 BCAS4Q8TDM0 211 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CENPIQ92674 756 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 EAF2Q96CJ1 260 aaPredicted RBP4.1□□□□□ -1.75
USH2A-202ENST00000366942 NRBF2Q96F24 287 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 C12orf66Q96MD2 445 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 SH3GL1Q99961 368 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 HERC2P3Q9BVR0 1158 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 CDADC1Q9BWV3 514 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 ADAM18Q9Y3Q7 739 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TELO2Q9Y4R8 837 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 OR5K3A6NET4 321 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms