RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 MMP2P08253 660 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 CCNB1P14635 433 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 PNLIPP16233 465 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 CTPS1P17812 591 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 NFKBIAP25963 317 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 GJC1P36383 396 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SKOR1P84550 965 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 CDK3Q00526 305 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 DSC2Q02487 901 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 MESDQ14696 234 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 TCEA2Q15560 299 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SLC9A4Q6AI14 798 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 USP45Q70EL2 814 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 HEATR4Q86WZ0 1026 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 RAVER1Q8IY67 606 aaKnown RBP13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 PAF1Q8N7H5 531 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 CNTD1Q8N815 330 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 OR6C4Q8NGE1 309 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 CCDC74AQ96AQ1 378 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SCARF2Q96GP6 870 aaPredicted RBP13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SLC46A1Q96NT5 459 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 BBC3Q96PG8 261 aaPredicted RBP13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 LYSMD1Q96S90 227 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 TSPY26PQ9H489 355 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 CYP4F12Q9HCS2 524 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SPTLC3Q9NUV7 552 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 ZNHIT6Q9NWK9 470 aaKnown RBP13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SIRPGQ9P1W8 387 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SATB2Q9UPW6 733 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 SLC17A4Q9Y2C5 497 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 PTPRQQ9UMZ3 2332 aa13.65□□□□□ -0.22
TNFRSF1A-202ENST00000366159 PMS2P1A4D2B8 440 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 RRP8O43159 456 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 GLB1P16278 677 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ZNF30P17039 623 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 MX2P20592 715 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CCL7P80098 99 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 TLE3Q04726 772 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 PPIDQ08752 370 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 HLTFQ14527 1009 aaKnown RBP eCLIP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CERCAMQ5T4B2 595 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 LRRC38Q5VT99 294 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 LRRC66Q68CR7 880 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 DENND2CQ68D51 928 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 LRRC69Q6ZNQ3 347 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 RHOT2Q8IXI1 618 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CCDC42Q96M95 316 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ABCG8Q9H221 673 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 DEF6Q9H4E7 631 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 PHPT1Q9NRX4 125 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 SPATS2LQ9NUQ6 558 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 TRNAU1APQ9NX07 287 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ATMQ13315 3056 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ATRXP46100 2492 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CAPN8A6NHC0 703 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CDRT15L2A8MXV6 281 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 FGF1P05230 155 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 IVLP07476 585 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 STC1P52823 247 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 RPL26P61254 145 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 IFI35P80217 286 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ITKQ08881 620 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ARHGEF7Q14155 803 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 SPIDRQ14159 915 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 TSR1Q2NL82 804 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 C3orf38Q5JPI3 329 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ADAMTSL4Q6UY14 1074 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ZNF765Q7L2R6 523 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 TAF8Q7Z7C8 310 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 SPACA3Q8IXA5 215 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CCDC13Q8IYE1 715 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 NDUFAF2Q8N183 169 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ZNF248Q8NDW4 579 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 FAM46DQ8NEK8 389 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 LIN37Q96GY3 246 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 OLFM3Q96PB7 478 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 WDR24Q96S15 920 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 LGMNQ99538 433 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 INTUQ9ULD6 942 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 SUFUQ9UMX1 484 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 RPL26L1Q9UNX3 145 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CHKBQ9Y259 395 aa13.64□□□□□ -0.23
TNFRSF1A-202ENST00000366159 NUDT21O43809 227 aaKnown RBP13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 JCHAINP01591 159 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 MLLT3P42568 568 aaPredicted RBP13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 POLD2P49005 469 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 PCBP4P57723 403 aaKnown RBP13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ZFP36L1Q07352 338 aaKnown RBP13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ZBTB17Q13105 803 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 NR1D2Q14995 579 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 TAZQ16635 292 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 KIF26BQ2KJY2 2108 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 C14orf28Q4W4Y0 310 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 SARM1Q6SZW1 724 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 ZNF438Q7Z4V0 828 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 B3GNT8Q7Z7M8 397 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 CLEC14AQ86T13 490 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 RNF214Q8ND24 703 aa13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 WDR36Q8NI36 951 aaKnown RBP13.63□□□□□ -0.23
TNFRSF1A-202ENST00000366159 SCAMP4Q969E2 229 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms