RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CDK14O94921 469 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 FMO4P31512 558 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 GRK4P32298 578 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 DNAJB13P59910 316 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 ESRRGP62508 458 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 SIRPB2Q5JXA9 342 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 RAP1GAP2Q684P5 730 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 LARP4Q71RC2 724 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 GPR141Q7Z602 305 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 DPF3Q92784 378 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 RANBP9Q96S59 729 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 SLC2A11Q9BYW1 496 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 CLK4Q9HAZ1 481 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 MAP10Q9P2G4 905 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 A0A0J9YVX5 310 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 ENPP3O14638 875 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 GOT2P00505 430 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 HNRNPCP07910 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 PCNAP12004 261 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 CD52P31358 61 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 DCTN2Q13561 401 aaKnown RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 NFYCQ13952 458 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 OR4D1Q15615 310 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 GNASQ5JWF2 1037 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 GPR107Q5VW38 600 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 C9orf131Q5VYM1 1079 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TIGD7Q6NT04 549 aaPredicted RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 RAB44Q7Z6P3 723 aaPredicted RBP12.13□□□□□ -0.47
CLIP3-201ENST00000360535 SLC22A9Q8IVM8 553 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 CLYBLQ8N0X4 340 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TCF12Q99081 682 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 ACOX2Q99424 681 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 SEMA3CQ99985 751 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 PRKD2Q9BZL6 878 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 OSER1Q9NX31 292 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 SLAMF8Q9P0V8 285 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 TMEM181Q9P2C4 612 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF711Q9Y462 761 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 COMMD10Q9Y6G5 202 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 MIA3Q5JRA6 1907 aa12.13□□□□□ -0.47
CLIP3-201ENST00000360535 MYADML2A6NDP7 307 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 EI24O14681 340 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 AZIN1O14977 448 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 S1PR4O95977 384 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 SLC2A3P11169 496 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF23P17027 643 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 PSMA4P25789 261 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 ENTPD1P49961 510 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 RENBPP51606 427 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 TSPY1Q01534 308 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 PIK3R6Q5UE93 754 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 CARM1Q86X55 608 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 SLC15A3Q8IY34 581 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 CFAP52Q8N1V2 620 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 MIER2Q8N344 545 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 RTL3Q8N8U3 475 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 GAB3Q8WWW8 586 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 ABCC13Q9NSE7 274 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 DUS2Q9NX74 493 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 CD300AQ9UGN4 299 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 EVLQ9UI08 416 aaPredicted RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 SH3BP1Q9Y3L3 701 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 TCRBV3S1A0A5B6 114 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 GLP2RO95838 553 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 FASP25445 335 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 DNAJB2P25686 324 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 EEF1DP29692 281 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 PRDX3P30048 256 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 GRB14Q14449 540 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 LPIN1Q14693 890 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 SCD5Q86SK9 330 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 RALGPS2Q86X27 583 aaPredicted RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 TMEM126BQ8IUX1 230 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 SLC25A51Q9H1U9 297 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 LMCD1Q9NZU5 365 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 NEU3Q9UQ49 428 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 TSC2P49815 1807 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 CLOCKO15516 846 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 KPNA6O60684 536 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 RHOBTB1O94844 696 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 GPX3P22352 226 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 LEPRP48357 1165 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 AGTR2P50052 363 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 INPP5AQ14642 412 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 UPP1Q16831 310 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 CMTR2Q8IYT2 770 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 TEX37Q96LM6 180 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 RPRD1AQ96P16 312 aaPredicted RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 SPON2Q9BUD6 331 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 ADI1Q9BV57 179 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 MUC3BQ9H195 1237 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 NOL6Q9H6R4 1146 aaKnown RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 CMTM6Q9NX76 183 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 PLK2Q9NYY3 685 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 RNF112Q9ULX5 631 aa12.12□□□□□ -0.47
CLIP3-201ENST00000360535 PRG3Q9Y2Y8 225 aaPredicted RBP12.12□□□□□ -0.47
CLIP3-201ENST00000360535 LAMA3Q16787 3333 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 PLXNB2O15031 1838 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 CCDC162PA2VCL2 907 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms