RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CLPTM1LQ96KA5 538 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 TMBIM4Q9HC24 238 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 CENPMQ9NSP4 180 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 DDX20Q9UHI6 824 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 CEP170Q5SW79 1584 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 RCCD1A6NED2 376 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 EFCAB10A6NFE3 127 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SLC38A8A6NNN8 435 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 CDKN1CP49918 316 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 RPS24P62847 133 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 C9orf57Q5W0N0 161 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 GPR141Q7Z602 305 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 GTPBP3Q969Y2 492 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 DYTNA2CJ06 578 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 HYKKA2RU49 373 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 MYL12AP19105 171 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 ACTR1BP42025 376 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 CLK3P49761 638 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 ACTR1AP61163 376 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 ARHGAP36Q6ZRI8 547 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 GK5Q6ZS86 529 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 BEND4Q6ZU67 534 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SLC34A3Q8N130 599 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 OR4L1Q8NH43 312 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SERPINB12Q96P63 405 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 TTPALQ9BTX7 342 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 EPS8L2Q9H6S3 715 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 LOC100509620A0A075B734 347 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 MYL12BO14950 172 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SNPHO15079 494 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SNUPNO95149 360 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SOX6P35712 828 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 HYAL4Q2M3T9 481 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 CCDC92Q53HC0 331 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 FAM45BPQ6NSW5 357 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SPPL2CQ8IUH8 684 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 OFCC1Q8IZS5 231 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 FAM45AQ8TCE6 357 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 UPF1Q92900 1129 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 PKP4Q99569 1192 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 ARHGAP39Q9C0H5 1083 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 PABPC3Q9H361 631 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 CARS2Q9HA77 564 aaKnown RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 MAGI3Q5TCQ9 1506 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 IL6P05231 212 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 TGFB3P10600 412 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 INHBEP58166 350 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF268Q14587 947 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-202ENST00000357409 MON1BQ7L1V2 547 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 TRIM74Q86UV6 250 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 IQCHQ86VS3 1027 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF540Q8NDQ6 660 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 BPIFA3Q9BQP9 254 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 IL21RQ9HBE5 538 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 PCDH9Q9HC56 1237 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 MALT1Q9UDY8 824 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 PLCL2Q9UPR0 1127 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 RAD54BQ9Y620 910 aa7.35□□□□□ -1.23
VPS13A-202ENST00000357409 SGTAO43765 313 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 NTSP30990 170 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GNALP38405 381 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 OMPP47874 163 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 PARP6Q2NL67 630 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 RASSF6Q6ZTQ3 369 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF605Q86T29 641 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 LINC00471Q8N535 108 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GMCL1P1Q8NEA9 526 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CENPIQ92674 756 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CHMP1AQ9HD42 196 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 GTF2IRD1Q9UHL9 959 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 VPS51Q9UID3 782 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 PRODHO43272 600 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MYCLP1P12525 358 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 APEHP13798 732 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 PTPN2P17706 415 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SERPINB1P30740 379 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CSKP41240 450 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SLC26A2P50443 739 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ITGADQ13349 1161 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SPANXN3Q5MJ09 141 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 HECTD2Q5U5R9 776 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TAF2Q6P1X5 1199 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MOSPD2Q8NHP6 518 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF75CPQ92670 426 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM209Q96SK2 561 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 VPS9D1Q9Y2B5 631 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SMAPO00193 183 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TNFRSF21O75509 655 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 MPOP05164 745 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ZBTB6Q15916 424 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 VARS2Q5ST30 1063 aaKnown RBP7.34□□□□□ -1.23
VPS13A-202ENST00000357409 TAPT1Q6NXT6 567 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 FAM35AQ86V20 835 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CD302Q8IX05 232 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 CYP4Z2PQ8N1L4 340 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ADAMTS15Q8TE58 950 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 SH3RF2Q8TEC5 729 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 ERCC6L2Q5T890 1561 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 BICRAQ9NZM4 1560 aa7.34□□□□□ -1.23
VPS13A-202ENST00000357409 RBP1P09455 135 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms