RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 KLHL4Q9C0H6 718 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 SAR1AQ9NR31 198 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 TLR9Q9NR96 1032 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ERVW-1Q9UQF0 538 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 TRBV23OR9-2A0A075B6M9 112 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 C15orf38-AP3S2A0A0A6YYH1 394 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 CNMDO75829 334 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 OTUD3Q5T2D3 398 aaPredicted RBP14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ARPINQ7Z6K5 226 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ZNF280BQ86YH2 543 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 DNAJB4Q9UDY4 337 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 GOT2P00505 430 aaKnown RBP14.89□□□□□ -0.03
COL17A1-201ENST00000353479 FSHRP23945 695 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 CLK1P49759 484 aaKnown RBP14.89□□□□□ -0.03
COL17A1-201ENST00000353479 ADGRF1Q5T601 910 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 FBXL22Q6P050 247 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 CLIP3Q96DZ5 547 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 FAIM2Q9BWQ8 316 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 PSMC3P17980 439 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 PTGIRP43119 386 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 KCNQ1P51787 676 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 TSTD2Q5T7W7 516 aa14.89□□□□□ -0.03
COL17A1-201ENST00000353479 BEND7Q8N7W2 519 aaPredicted RBP14.89□□□□□ -0.03
COL17A1-201ENST00000353479 EPORP19235 508 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SEMG2Q02383 582 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 PPM1JQ5JR12 505 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 TXNRD3NBQ6F5E7 133 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 C17orf99Q6UX52 265 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 CERS6Q6ZMG9 384 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 TMEM26Q6ZUK4 368 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 ACTRT2Q8TDY3 377 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 HERVK_113Q902F9 699 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 NXNL1Q96CM4 212 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 ZMAT2Q96NC0 199 aaKnown RBP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SMOQ99835 787 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 GPR88Q9GZN0 384 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 RAD21L1Q9H4I0 556 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 CLIC5Q9NZA1 410 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 FKBPLQ9UIM3 349 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 VIRMAQ69YN4 1812 aaKnown RBP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 PFKMP08237 780 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 RNF19BQ6ZMZ0 732 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 PAGE2Q7Z2X7 111 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SMAD5Q99717 465 aaKnown RBP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 ACSS2Q9NR19 701 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 PNPOQ9NVS9 261 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 GULP1Q9UBP9 304 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SNTNA6NMZ2 147 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 FAM220BPB1ANY3 271 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SMNDC1O75940 238 aaKnown RBP eCLIP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 GRSF1Q12849 480 aaKnown RBP eCLIP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 USP4Q13107 963 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 GPR17Q13304 367 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 CDK20Q8IZL9 346 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 ITFG1Q8TB96 612 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 CIDEBQ9UHD4 219 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 TCHHQ07283 1943 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 PIRO00625 290 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SNRPB2P08579 225 aaKnown RBP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 ATP6V1C1P21283 382 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 SCNN1AP37088 669 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 CLYBLQ8N0X4 340 aa14.88□□□□□ -0.03
COL17A1-201ENST00000353479 CLP1Q92989 425 aaKnown RBP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 ZBED3Q96IU2 234 aaPredicted RBP14.88□□□□□ -0.03
COL17A1-201ENST00000353479 MAT2AP31153 395 aaKnown RBP14.87□□□□□ -0.03
COL17A1-201ENST00000353479 GJA5P36382 358 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 RAD23AP54725 363 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 RGS1Q08116 209 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 UBAP2LQ14157 1087 aaKnown RBP14.87□□□□□ -0.03
COL17A1-201ENST00000353479 FGD3Q5JSP0 725 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 AP1ARQ63HQ0 302 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 IZUMO2Q6UXV1 221 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 MICU2Q8IYU8 434 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 ADAMTS10Q9H324 1103 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 SCML2Q9UQR0 700 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 MTMR11A4FU01 709 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 PABPC1P11940 636 aaKnown RBP14.87□□□□□ -0.03
COL17A1-201ENST00000353479 NOVP48745 357 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 RAB30Q15771 203 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 MAPKAPK3Q16644 382 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 OLFML1Q6UWY5 402 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 VITQ6UXI7 678 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 CHMP1BQ7LBR1 199 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 SERPINA9Q86WD7 417 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 UTP15Q8TED0 518 aaKnown RBP14.87□□□□□ -0.03
COL17A1-201ENST00000353479 C8orf48Q96LL4 319 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 DLGAP2Q9P1A6 1054 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 COL16A1Q07092 1604 aaPredicted RBP14.87□□□□□ -0.03
COL17A1-201ENST00000353479 LRATO95237 230 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 BPGMP07738 259 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 CSF2RAP15509 400 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 CCR4P51679 360 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 LBX1P52954 281 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 SNAP47Q5SQN1 464 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 BDH2Q9BUT1 245 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 UGT2B28Q9BY64 529 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 CRTAC1Q9NQ79 661 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 URADA6NGE7 173 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 GPR32O75388 356 aa14.87□□□□□ -0.03
COL17A1-201ENST00000353479 RASGRP1O95267 797 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms