RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TIGD6Q17RP2 521 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 EML3Q32P44 896 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CES4AQ5XG92 561 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 MAP4K3Q8IVH8 894 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 APOBEC4Q8WW27 367 aaKnown RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 OSBPL3Q9H4L5 887 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ACTR5Q9H9F9 607 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 LMBRD1Q9NUN5 540 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 HPF1Q9NWY4 346 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PCDHA7Q9UN72 937 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ATP8A1Q9Y2Q0 1164 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SPIN1Q9Y657 262 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM131LA2VDJ0 1609 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 A0A1B0GUA9 196 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 C2orf74A8MZ97 194 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 SF3A2Q15428 464 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 C4orf17Q53FE4 359 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 FAM78AQ5JUQ0 283 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM211Q6ICI0 200 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 SLC47A2Q86VL8 602 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 SLC22A8Q8TCC7 542 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 KCNV2Q8TDN2 545 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 CLP1Q92989 425 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 DACT3Q96B18 629 aaPredicted RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 MRPL48Q96GC5 212 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 VAT1Q99536 393 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 SLC17A9Q9BYT1 436 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 FAM107BQ9H098 131 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 EPN3Q9H201 632 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 PAK5Q9P286 719 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 COPG1Q9Y678 874 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 LMO7Q8WWI1 1683 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 STMND1H3BQB6 276 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 J3QKU1 62 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 SLC37A4O43826 429 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 IL32P24001 234 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 EPHB4P54760 987 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 Q6ZVU0 165 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 B4GALNT4Q76KP1 1039 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 PACS2Q86VP3 889 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF280BQ86YH2 543 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 TRIML2Q8N7C3 387 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 ANKS4BQ8N8V4 417 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 KLHDC9Q8NEP7 349 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 ZCCHC10Q8TBK6 192 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 IGDCC4Q8TDY8 1250 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 ZDHHC16Q969W1 377 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 PPWD1Q96BP3 646 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 AGPAT1Q99943 283 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 CWC15Q9P013 229 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 PPT2Q9UMR5 302 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 YBX2Q9Y2T7 364 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 A0A1W2PQ27 194 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 A0A1W2PQ64 194 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 RTN2O75298 545 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 SLITRK3O94933 977 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 GJA4P35212 333 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 MAGEA11P43364 429 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 MAPKAPK2P49137 400 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 HHEXQ03014 270 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 LRRC74BQ6ZQY2 392 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 CFHR5Q9BXR6 569 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 GPR62Q9BZJ7 368 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 TRABDQ9H4I3 376 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 AGO3Q9H9G7 860 aaKnown RBP8.4□□□□□ -1.06
HMGB1-203ENST00000341423 TRHDEQ9UKU6 1024 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.4□□□□□ -1.064e-6■■■□□ 17.3
HMGB1-203ENST00000341423 MMP17Q9ULZ9 603 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 L3MBTL1Q9Y468 752 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 PCDHGC4Q9Y5F7 938 aa8.4□□□□□ -1.06
HMGB1-203ENST00000341423 RFPL1O75677 317 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 PAPSS2O95340 614 aaPredicted RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 KRT16P08779 473 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 HOXA9P31269 272 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 CARSP49589 748 aaKnown RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 CAPZA1P52907 286 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 TAPT1Q6NXT6 567 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 RHBDF2Q6PJF5 856 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 PSTKQ8IV42 348 aaKnown RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 GOLPH3Q9H4A6 298 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 NOL6Q9H6R4 1146 aaKnown RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 RAB6BQ9NRW1 208 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 LRIT1Q9P2V4 623 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 UVRAGQ9P2Y5 699 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 SIK3Q9Y2K2 1263 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 MAFBQ9Y5Q3 323 aaPredicted RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 ARGFXA6NJG6 315 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 FIGNL2A6NMB9 653 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 TNFRSF10BO14763 440 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 B3GALT2O43825 422 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 REM1O75628 298 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 MTHFD2P13995 350 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 NT5EP21589 574 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 HOXD12P35452 270 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 SKIV2L2P42285 1042 aaKnown RBP8.4□□□□□ -1.07
HMGB1-203ENST00000341423 GPR15P49685 360 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 HSD17B7P56937 341 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 TUBB3Q13509 450 aa8.4□□□□□ -1.07
HMGB1-203ENST00000341423 SMU1Q2TAY7 513 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms