RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TEKT5Q96M29 485 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SH3GL1Q99961 368 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 DPY30Q9C005 99 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SEMA4AQ9H3S1 761 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 MEIS3P2A8K0S8 358 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 HS6ST1O60243 411 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 KAT7O95251 611 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 PKMP14618 531 aaKnown RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 CEBPBP17676 345 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SLC8A1P32418 973 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 RFX3P48380 749 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SLC1A6P48664 564 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 CRYMQ14894 314 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 XKR6Q5GH73 641 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SH3PXD2AQ5TCZ1 1133 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 NRSN1Q8IZ57 195 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 PCDH19Q8TAB3 1148 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SIKE1Q9BRV8 207 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SPATS2LQ9NUQ6 558 aaKnown RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 RABGEF1Q9UJ41 708 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 CLK3P49761 638 aaKnown RBP10.15□□□□□ -0.79
USP54-201ENST00000339859 DUSP3P51452 185 aaPredicted RBP10.15□□□□□ -0.79
USP54-201ENST00000339859 LAPTM5Q13571 262 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 MSANTD2Q6P1R3 559 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 SNX20Q7Z614 316 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 SERPINA9Q86WD7 417 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 C17orf64Q86WR6 236 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 KBTBD7Q8WVZ9 684 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 DNAJC1Q96KC8 554 aaKnown RBP10.15□□□□□ -0.79
USP54-201ENST00000339859 MRPL57Q9BQC6 102 aaKnown RBP10.15□□□□□ -0.79
USP54-201ENST00000339859 PCBD2Q9H0N5 130 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 EPN3Q9H201 632 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 RHBGQ9H310 441 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 CYP8B1Q9UNU6 501 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 USP15Q9Y4E8 981 aaPredicted RBP10.15□□□□□ -0.79
USP54-201ENST00000339859 KCNE2Q9Y6J6 123 aa10.15□□□□□ -0.79
USP54-201ENST00000339859 H0YGN5 161 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SLC28A1O00337 649 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 PHGDHO43175 533 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 IFNA16P05015 189 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 RPL3P39023 403 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 DPP6P42658 865 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 RPL26P61254 145 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 CLDN10P78369 228 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ZNF33AQ06730 810 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 CYLC2Q14093 348 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 TSTD2Q5T7W7 516 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 NCBP2-AS2Q69YL0 99 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 TMEM220Q6QAJ8 160 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ZFP28Q8NHY6 868 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ACMSDQ8TDX5 336 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 MSANTD3Q96H12 275 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 FIZ1Q96SL8 496 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 NUSAP1Q9BXS6 441 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 RPL26L1Q9UNX3 145 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 TRIM43BA6NCK2 446 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 FKBP9O95302 570 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ENO3P13929 434 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 PPP2R1BP30154 601 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 DRG2P55039 364 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 RPL6Q02878 288 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 ZCCHC8Q6NZY4 707 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 FKBP9P1Q75LS8 142 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 TEX9Q8N6V9 391 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 TRIM43Q96BQ3 446 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 ECSITQ9BQ95 431 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 AIF1LQ9BQI0 150 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SYPP08247 313 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 MYBL2P10244 700 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SNCBQ16143 134 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 PTCRAQ6ISU1 281 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 SLC36A4Q6YBV0 504 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 C15orf39Q6ZRI6 1047 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 CFAP206Q8IYR0 622 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 MPP5Q8N3R9 675 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 TRMT2BQ96GJ1 504 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 ZNF641Q96N77 438 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 ZBP1Q9H171 429 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 VWA7Q9Y334 891 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 WDR47O94967 919 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 OGNP20774 298 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 CDH3P22223 829 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 HSD17B2P37059 387 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 GNA13Q14344 377 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ZNHIT3Q15649 155 aaPredicted RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 ARCQ7LC44 396 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 CLP1Q92989 425 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 NEUROG2Q9H2A3 272 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 DTLQ9NZJ0 730 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 MRPS33Q9Y291 106 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 SNX8Q9Y5X2 465 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 H3BNC9 293 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 PRAMEF11O60813 436 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 NSG1P42857 185 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ACSM2AQ08AH3 577 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 LMAN2Q12907 356 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 SF1Q15637 639 aaKnown RBP10.14□□□□□ -0.79
USP54-201ENST00000339859 PFKFB4Q16877 469 aa10.14□□□□□ -0.79
USP54-201ENST00000339859 ACSM2BQ68CK6 577 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms