RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TBC1D3EA0A087X179 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3KA0A087X1G2 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3FA6NER0 549 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 URADA6NGE7 173 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3LB9A6J9 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 EIF3FO00303 357 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 WNT9AO14904 365 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3HP0C7X1 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PTPN4P29074 926 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CRHR1P34998 444 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 HTRA3P83110 453 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 ATP6AP1LQ52LC2 224 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 RAB41Q5JT25 222 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SH3PXD2AQ5TCZ1 1133 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 LIPMQ5VYY2 423 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3GQ6DHY5 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3CQ6IPX1 549 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PAGE2Q7Z2X7 111 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TBC1D3Q8IZP1 549 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 TNS4Q8IZW8 715 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 C3orf58Q8NDZ4 430 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SELENOMQ8WWX9 145 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 INPP5DQ92835 1189 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 NT5C3BQ969T7 300 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PIWIL1Q96J94 861 aaKnown RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 B3GALT6Q96L58 329 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 EFCAB11Q9BUY7 163 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 MKL2Q9ULH7 1088 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 BGNP21810 368 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 FMO4P31512 558 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 HNF4AP41235 474 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 MAGEA6P43360 314 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 LCP2Q13094 533 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 HABP4Q5JVS0 413 aaKnown RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 SAMD4BQ5PRF9 694 aaKnown RBP6.86□□□□□ -1.31
SF3B1-201ENST00000335508 PRMT9Q6P2P2 845 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 RANBP10Q6VN20 620 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 CLSTN3Q9BQT9 956 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 USP29Q9HBJ7 922 aa6.86□□□□□ -1.31
SF3B1-201ENST00000335508 EDDM13A0A1B0GTR0 161 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CCDC160A6NGH7 325 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 WASH4PA8MWX3 477 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 AZIN1O14977 448 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CA3P07451 260 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PPIBP23284 216 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 MZF1P28698 734 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PPP2R1BP30154 601 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CSKP41240 450 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 HPCAP84074 193 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 OVGP1Q12889 678 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PDCD2Q16342 344 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RBBP7Q16576 425 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SNX30Q5VWJ9 437 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CAPN13Q6MZZ7 669 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RNF19BQ6ZMZ0 732 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SCD5Q86SK9 330 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RGL4Q8IZJ4 473 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 IMP4Q96G21 291 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ZSCAN5AQ9BUG6 496 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GATA5Q9BWX5 397 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 FBXO6Q9NRD1 293 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CACNG4Q9UBN1 327 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 BLOC1S6Q9UL45 172 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 MRPL42Q9Y6G3 142 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SPTBN1Q01082 2364 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GNG14A0A1W2PPG7 69 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 MAN2B1O00754 1011 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 DCLK1O15075 740 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 COCHO43405 550 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 FKBP6O75344 327 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 DEAF1O75398 565 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GNAZP19086 355 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PRIM2P49643 509 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ATXN1P54253 815 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF776Q68DI1 518 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 BHLHB9Q6PI77 547 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SNX20Q7Z614 316 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 AUTS2Q8WXX7 1259 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 VPS50Q96JG6 964 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 DNAJC1Q96KC8 554 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 NUSAP1Q9BXS6 441 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RAD21L1Q9H4I0 556 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ALG9Q9H6U8 611 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 DCLRE1BQ9H816 532 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SPHK2Q9NRA0 654 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PIH1D1Q9NWS0 290 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RAB23Q9ULC3 237 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 AIM2O14862 343 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RGS14O43566 566 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RNASEH2AO75792 299 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ADH5P11766 374 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 HSD17B2P37059 387 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SLC7A9P82251 487 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CNTN1Q12860 1018 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PLCL1Q15111 1095 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PFKFB4Q16877 469 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ANKRD22Q5VYY1 191 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ESRP1Q6NXG1 681 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RHBDF2Q6PJF5 856 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GRASPQ7Z6J2 395 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms