RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GAPDHSO14556 408 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 SHOX2O60902 331 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 S1PR4O95977 384 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 SRFP11831 508 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 HLA-EP13747 358 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 MMP12P39900 470 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 ADARP55265 1226 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 MPP1Q00013 466 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PEX6Q13608 980 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 BMPR2Q13873 1038 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PTPRCAPQ14761 206 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 ZKSCAN8Q15776 578 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 HSF5Q4G112 596 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 RNF187Q5TA31 235 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 MROH9Q5TGP6 573 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PTCRAQ6ISU1 281 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PARS2Q7L3T8 475 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 TRMT11Q7Z4G4 463 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 LCA5Q86VQ0 697 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 DCLK2Q8N568 766 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 ZNF366Q8N895 744 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 ZNF513Q8N8E2 541 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PIP4K2CQ8TBX8 421 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 DENND1AQ8TEH3 1009 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PPP1R16AQ96I34 528 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 APOPT1Q96IL0 206 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 CABS1Q96KC9 395 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PLEKHG4BQ96PX9 1271 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 HDAC8Q9BY41 377 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 CDH19Q9H159 772 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 RSPH9Q9H1X1 276 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 SUDS3Q9H7L9 328 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PCDH12Q9NPG4 1184 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 FKBPLQ9UIM3 349 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 APPL1Q9UKG1 709 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 C5orf42Q9H799 3197 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 SHISA7A6NL88 538 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 SRRM3A6NNA2 597 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 FOXO6A8MYZ6 492 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 C1QTNF3-AMACRE9PGA6 284 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 AREL1O15033 823 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 TM9SF1O15321 606 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 BUD23O43709 281 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 RRP9O43818 475 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 NEK3P51956 506 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 MRPS21P82921 87 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 CACNG1Q06432 222 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 RALGDSQ12967 914 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 CTBP1Q13363 440 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 TDGQ13569 410 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 MPP2Q14168 576 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 PTPRRQ15256 657 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 FBXO43Q4G163 708 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 FAM46CQ5VWP2 391 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 LRRC66Q68CR7 880 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 CERS6Q6ZMG9 384 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 CCDC91Q7Z6B0 441 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 PTAR1Q7Z6K3 402 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 SDCCAG8Q86SQ7 713 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 TSPAN33Q86UF1 283 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 C4orf33Q8N1A6 199 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 PAF1Q8N7H5 531 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 RAB7BQ96AH8 199 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 FAM131CQ96AQ9 280 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 ACOX2Q99424 681 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 CCDC134Q9H6E4 229 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 RAD18Q9NS91 495 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 CACNA2D2Q9NY47 1150 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 PSD3Q9NYI0 1048 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 SARDHQ9UL12 918 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 ANKRD36A6QL64 1941 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 TICRRQ7Z2Z1 1910 aa14.89□□□□□ -0.03
CCDC88C-202ENST00000334448 OR51F1A6NGY5 319 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CCL22O00626 93 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 TPP1O14773 563 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 PFDN6O15212 129 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 SPINT1O43278 529 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 ZWINTO95229 277 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CLDN7O95471 211 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 MPOP05164 745 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 EPHX1P07099 455 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 C1SP09871 688 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 PYGBP11216 843 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 BPIP17213 487 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CD9P21926 228 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 NTSR1P30989 418 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 MC4RP32245 332 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CRHR1P34998 444 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 SPAM1P38567 509 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 MDH1P40925 334 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 TTPAP49638 278 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 TMPRSS15P98073 1019 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 POU4F1Q01851 419 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CREB5Q02930 508 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 PTSQ03393 145 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 ELP6Q0PNE2 266 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 GRSF1Q12849 480 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 SEMA3AQ14563 771 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 INSCQ1MX18 579 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 GPR33Q49SQ1 333 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms