RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MAPK4P31152 587 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 HOXC9P31274 260 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 STX2P32856 288 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 UBA7P41226 1012 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 PCYT1AP49585 367 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 LINC00205P59089 165 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GAGE1Q13065 139 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GAGE4Q13068 117 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 MEA1Q16626 185 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 ANKRD54Q6NXT1 300 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 CLEC4GQ6UXB4 293 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 PQLC2Q6ZP29 291 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 SEPT14Q6ZU15 432 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 TAOK1Q7L7X3 1001 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 CACNA2D4Q7Z3S7 1137 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 HAPLN4Q86UW8 402 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 ADGRF2Q8IZF7 708 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 DSELQ8IZU8 1212 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 SPATA6LQ8N4H0 392 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 TTC39CQ8N584 583 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 IQCF1Q8N6M8 205 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 Q8N9P0 234 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-201ENST00000326004 ADAMTS14Q8WXS8 1223 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 MIB2Q96AX9 1013 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 PHF21BQ96EK2 531 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 C1orf74Q96LT6 269 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 SEPT5Q99719 369 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-201ENST00000326004 SDF4Q9BRK5 362 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 GHITMQ9H3K2 345 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 PPP1R3EQ9H7J1 279 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 C17orf75Q9HAS0 396 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 RANGRFQ9HD47 186 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-201ENST00000326004 LTB4R2Q9NPC1 389 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 CNGB3Q9NQW8 809 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 CWC15Q9P013 229 aaKnown RBP3.4□□□□□ -1.87
HMGB1-201ENST00000326004 TTC7AQ9ULT0 858 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-201ENST00000326004 SESN1Q9Y6P5 492 aa3.4□□□□□ -1.87
HMGB1-201ENST00000326004 CPED1A4D0V7 1026 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CLEC18AA5D8T8 446 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 A6NCN8 305 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 PTGES3LE9PB15 166 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 VILLO15195 856 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 INSIG1O15503 277 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 JRKO75564 520 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 FTCDO95954 541 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CYC1P08574 325 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 RRM1P23921 792 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 HOXA13P31271 388 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-201ENST00000326004 HOXD13P35453 343 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 PIK3CAP42336 1068 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 COMPP49747 757 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-201ENST00000326004 LRMPQ12912 555 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 PLCB4Q15147 1175 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 NAB2Q15742 525 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 EFNB3Q15768 340 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 HLFQ16534 295 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 PCGF3Q3KNV8 242 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 AMZ1Q400G9 498 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 SIGIRRQ6IA17 410 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 JADE1Q6IE81 842 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CFAP161Q6P656 301 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 KCTD18Q6PI47 426 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-201ENST00000326004 B3GNT6Q6ZMB0 384 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 DPPA4Q7L190 304 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-201ENST00000326004 FJX1Q86VR8 437 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CCDC13Q8IYE1 715 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CLIP4Q8N3C7 705 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 WDTC1Q8N5D0 677 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 NEXN-AS1Q8NBZ9 246 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CLEC18CQ8NCF0 446 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 B4GALNT2Q8NHY0 566 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 MAGEC3Q8TD91 643 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 ELP5Q8TE02 316 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 IGSF8Q969P0 613 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 ZBTB9Q96C00 473 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 NSUN4Q96CB9 384 aaKnown RBP3.39□□□□□ -1.87
HMGB1-201ENST00000326004 CAMK1GQ96NX5 476 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 ACOX2Q99424 681 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 KXD1Q9BQD3 176 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 PCGF1Q9BSM1 259 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 TMEM204Q9BSN7 226 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 HAUS8Q9BT25 410 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 SEZ6LQ9BYH1 1024 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 SMARCAD1Q9H4L7 1026 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 SLC28A3Q9HAS3 691 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 HAUS2Q9NVX0 235 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 TERF2IPQ9NYB0 399 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 UBA2Q9UBT2 640 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-201ENST00000326004 SWAP70Q9UH65 585 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 VPS28Q9UK41 221 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 GPR34Q9UPC5 381 aa3.39□□□□□ -1.87
HMGB1-201ENST00000326004 GOLGA6L9A6NEM1 432 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CDRT15L2A8MXV6 281 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 K7ENM7 598 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 VCYO14598 125 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 TSPAN9O75954 239 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 OR2C1O95371 312 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 IGHV4-30-4P0DP06 118 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 G6PDP11413 515 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms