RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 SH3BP2P78314 561 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 TSNQ15631 228 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 SGO1Q5FBB7 561 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 ZRANB3Q5FWF4 1079 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 TMEM102Q8N9M5 508 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 TMEM74Q96NL1 305 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 SMIM14Q96QK8 99 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 TCF12Q99081 682 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 ZYG11BQ9C0D3 744 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 ADNPQ9H2P0 1102 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 GID8Q9NWU2 228 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 CCDC162PA2VCL2 907 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 TARM1B6A8C7 271 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 GPR182O15218 404 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 CLASP2O75122 1294 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 PFKPQ01813 784 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 CBLBQ13191 982 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 USP50Q70EL3 339 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 RALGPS2Q86X27 583 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 CDYL2Q8N8U2 506 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 HAPLN3Q96S86 360 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 KCTD14Q9BQ13 255 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 PNPLA3Q9NST1 481 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 OAZ3Q9UMX2 235 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 ENPP3O14638 875 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 HTRA2O43464 458 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 LBPP18428 481 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 SLC7A1P30825 629 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 ADARP55265 1226 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 MAPRE1Q15691 268 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 UPP1Q16831 310 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 RAB41Q5JT25 222 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 PIK3R6Q5UE93 754 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 GDF6Q6KF10 455 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 ZNF467Q7Z7K2 595 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 RETREG3Q86VR2 466 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 C2orf69Q8N8R5 385 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 FNDC5Q8NAU1 212 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 PFDN4Q9NQP4 134 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 CATSPERZQ9NTU4 200 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 DNAJC15Q9Y5T4 150 aa12.88□□□□□ -0.35
HMGCS1-201ENST00000325110 SLC22A2O15244 555 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 ALDOCP09972 364 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 IMPDH1P20839 514 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 PRKCQQ04759 706 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 LRP8Q14114 963 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 ZNF678Q5SXM1 525 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 SMYD5Q6GMV2 418 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 KIAA0408Q6ZU52 694 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 CLEC4FQ8N1N0 589 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 RSPH1Q8WYR4 309 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 PGAP3Q96FM1 320 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 FBXL20Q96IG2 436 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 TSGA13Q96PP4 275 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 CDK15Q96Q40 435 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 GSTO2Q9H4Y5 243 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 MARCH2Q9P0N8 246 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 WARS2Q9UGM6 360 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 GNGT2O14610 69 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 EI24O14681 340 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 BNIP3LO60238 219 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 CDK14O94921 469 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 ZNF26P17031 533 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 APLP1P51693 650 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 MLLT6P55198 1093 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 PTPRNQ16849 979 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 UNC50Q53HI1 259 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 GPR107Q5VW38 600 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 ANKS6Q68DC2 871 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 FAM45BPQ6NSW5 357 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 PAQR3Q6TCH7 311 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 FRA10AC1Q70Z53 315 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 ISCA2Q86U28 154 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 TTC9BQ8N6N2 239 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 OR13J1Q8NGT2 312 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 FAM45AQ8TCE6 357 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 GIPC2Q8TF65 315 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 RTP3Q9BQQ7 232 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 TREX1Q9NSU2 369 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 RNF11Q9Y3C5 154 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 NPEPPSL1A6NEC2 478 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 NME4O00746 187 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 HSPA1AP0DMV8 641 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 HSPA1BP0DMV9 641 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 IRF1P10914 325 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 CAPN3P20807 821 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 SLC5A2P31639 672 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 NDST2P52849 883 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 TWF1Q12792 350 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 GPR162Q16538 588 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 TMEM207Q6UWW9 146 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 SCD5Q86SK9 330 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 BBS5Q8N3I7 341 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 NAT16Q8N8M0 369 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 LPCAT1Q8NF37 534 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 OR4K2Q8NGD2 314 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 IRGQQ8WZA9 623 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 PPM1MQ96MI6 270 aa12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 CLK4Q9HAZ1 481 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-201ENST00000325110 DOCK3Q8IZD9 2030 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms