RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ANKLE1Q8NAG6 615 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GSTCDQ8NEC7 633 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 NTAN1Q96AB6 310 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 AGAP3Q96P47 875 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GFM1Q96RP9 751 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 C1QTNF1Q9BXJ1 281 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MAGEL2Q9UJ55 1249 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ANAPC2Q9UJX6 822 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 YARS2Q9Y2Z4 477 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 TCRBV5S1A1TA0A578 114 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 DYNC1LI2O43237 492 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 TMEM63AO94886 807 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 FARP2O94887 1054 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 CD53P19397 219 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 RPS12P25398 132 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 CLCN5P51795 746 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 GADL1Q6ZQY3 521 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 GALNT7Q86SF2 657 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TDRD5Q8NAT2 981 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 GAB3Q8WWW8 586 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 FCGR1BQ92637 280 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 PROX1Q92786 737 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CLP1Q92989 425 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 KAT5Q92993 513 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CPXM1Q96SM3 734 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 PHB2Q99623 299 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CHIAQ9BZP6 476 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 ARMC7Q9H6L4 198 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 RNF146Q9NTX7 359 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CRNNQ9UBG3 495 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 I3L521 148 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CD4P01730 458 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 ITGB5P18084 799 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CHRNA5P30532 468 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 BCAT1P54687 386 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 ITGA7Q13683 1181 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 DALRD3Q5D0E6 543 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 ZNF484Q5JVG2 852 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CASP12Q6UXS9 341 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CMTR2Q8IYT2 770 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 ZNF655Q8N720 491 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 ZSCAN18Q8TBC5 510 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 IPCEF1Q8WWN9 437 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 SIGLEC10Q96LC7 697 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 KCTD14Q9BQ13 255 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 TREM1Q9NP99 234 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 XPNPEP3Q9NQH7 507 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 POLLQ9UGP5 575 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SLC25A13Q9UJS0 675 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 ECM29Q5VYK3 1845 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SLC15A5A6NIM6 579 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 DFFAO00273 331 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 NR5A2O00482 541 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 LDLRP01130 860 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CLTBP09497 229 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CETPP11597 493 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 ITIH1P19827 911 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CAP2P40123 477 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SLC25A11Q02978 314 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 GK3PQ14409 553 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 PGM5Q15124 567 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TIMM50Q3ZCQ8 353 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 RBM48Q5RL73 367 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 ERMP1Q7Z2K6 904 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 COMTD1Q86VU5 262 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 PIM2Q9P1W9 311 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TPRKBQ9Y3C4 175 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CLDN25C9JDP6 229 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 LOC110117498-PIK3R3F6TDL0 507 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 NADKO95544 446 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 CPSF4O95639 269 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 CRTAMO95727 393 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TUBG1P23258 451 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 INCA1Q0VD86 236 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SNAP47Q5SQN1 464 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 RFWD3Q6PCD5 774 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SVOPLQ8N434 492 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SPERTQ8NA61 448 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TPD52L3Q96J77 140 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 FEM1CQ96JP0 617 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 FAM118BQ9BPY3 351 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 MTG1Q9BT17 334 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 SENP6Q9GZR1 1112 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS35-201ENST00000299138 GGA3Q9NZ52 723 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SH3BP4Q9P0V3 963 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TDRKHQ9Y2W6 561 aaKnown RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 GRIP1Q9Y3R0 1128 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 PRSS51A0A1B0GVH4 220 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TEX46H3BTG2 121 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 RAD17O75943 681 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 GRK5P34947 590 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 ZNF267Q14586 743 aaPredicted RBP6.41□□□□□ -1.38
VPS35-201ENST00000299138 TOR1AIP1Q5JTV8 583 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CHADLQ6NUI6 762 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 MYO1HQ8N1T3 1032 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 GRPEL2Q8TAA5 225 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 SERAC1Q96JX3 654 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 C12orf42Q96LP6 360 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 MAGEB10Q96LZ2 347 aaPredicted RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms