RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SMAD4Q13485 552 aaKnown RBP16.83■□□□□ 0.28
CPSF4-201ENST00000292476 THOC5Q13769 683 aaKnown RBP16.83■□□□□ 0.28
CPSF4-201ENST00000292476 CYTH1Q15438 398 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 UGP2Q16851 508 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 AAGABQ6PD74 315 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 ADGRG6Q86SQ4 1221 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 ALG14Q96F25 216 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 COL25A1Q9BXS0 654 aaPredicted RBP16.83■□□□□ 0.28
CPSF4-201ENST00000292476 SPHK2Q9NRA0 654 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 GDE1Q9NZC3 331 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 MARK1Q9P0L2 795 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 VPS51Q9UID3 782 aa16.83■□□□□ 0.28
CPSF4-201ENST00000292476 G3V2L1 256 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 CCNT2O60583 730 aaKnown RBP16.82■□□□□ 0.28
CPSF4-201ENST00000292476 TRIM13O60858 407 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 PAPSS2O95340 614 aaPredicted RBP16.82■□□□□ 0.28
CPSF4-201ENST00000292476 PRAMEF12O95522 483 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 HOXB8P17481 243 aaPredicted RBP16.82■□□□□ 0.28
CPSF4-201ENST00000292476 TPH1P17752 444 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 FSHRP23945 695 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 CPA2P48052 419 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 SCNN1BP51168 640 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 OLIG2Q13516 323 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 PUS10Q3MIT2 529 aaKnown RBP16.82■□□□□ 0.28
CPSF4-201ENST00000292476 PPM1JQ5JR12 505 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 RARS2Q5T160 578 aaKnown RBP16.82■□□□□ 0.28
CPSF4-201ENST00000292476 IRGCQ6NXR0 463 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 MAVSQ7Z434 540 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 GPR149Q86SP6 731 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 CNTN4Q8IWV2 1026 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 PEX13Q92968 403 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 BBS2Q9BXC9 721 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 ADGRE3Q9BY15 652 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 CDH19Q9H159 772 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 RHOJQ9H4E5 214 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 CHRAC1Q9NRG0 131 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 ABCB8Q9NUT2 735 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 OBP2AQ9NY56 170 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 TCAF1Q9Y4C2 921 aa16.82■□□□□ 0.28
CPSF4-201ENST00000292476 SLC22A2O15244 555 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 TMCC1O94876 653 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 SNUPNO95149 360 aaKnown RBP16.81■□□□□ 0.28
CPSF4-201ENST00000292476 CR2P20023 1033 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 GLDCP23378 1020 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ABL2P42684 1182 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 NUMBP49757 651 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 RHOAP61586 193 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 AP2B1P63010 937 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 MXRA7P84157 204 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 BTKQ06187 659 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ILF2Q12905 390 aaKnown RBP16.81■□□□□ 0.28
CPSF4-201ENST00000292476 LMAN2Q12907 356 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ITGA9Q13797 1035 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 UBAP2LQ14157 1087 aaKnown RBP16.81■□□□□ 0.28
CPSF4-201ENST00000292476 POU6F1Q14863 301 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 PLEKHG6Q3KR16 790 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 CES3Q6UWW8 571 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 RIPOR1Q6ZS17 1223 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 CMC1Q7Z7K0 106 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ADGRG2Q8IZP9 1017 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ITFG1Q8TB96 612 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ING5Q8WYH8 240 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 JADE3Q92613 823 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 BHMTQ93088 406 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 VPS39Q96JC1 886 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 S1PR5Q9H228 398 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 NMRAL1Q9HBL8 299 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 C20orf96Q9NUD7 363 aaPredicted RBP16.81■□□□□ 0.28
CPSF4-201ENST00000292476 MUSKO15146 869 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 MAP3K7O43318 606 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 SNAP91O60641 907 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 NDST3O95803 873 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 C2P06681 752 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 CSNK1DP48730 415 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 AP1S1P61966 158 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 HSP90AA5PQ58FG0 334 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 EPGNQ6UW88 154 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 TMEM25Q86YD3 366 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 ZSWIM3Q96MP5 696 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 TSNARE1Q96NA8 513 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 UHRF1Q96T88 793 aaPredicted RBP16.81■□□□□ 0.28
CPSF4-201ENST00000292476 THTPAQ9BU02 230 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 PNPOQ9NVS9 261 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 PLK2Q9NYY3 685 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 SLC7A8Q9UHI5 535 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 FAM50BQ9Y247 325 aa16.81■□□□□ 0.28
CPSF4-201ENST00000292476 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.81■□□□□ 0.28
CPSF4-201ENST00000292476 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.8■□□□□ 0.28
CPSF4-201ENST00000292476 A6NHS1 94 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 NEDD8-MDP1E9PL57 170 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 HSPA4LO95757 839 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 KLC1Q07866 573 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 CBX2Q14781 532 aaPredicted RBP16.8■□□□□ 0.28
CPSF4-201ENST00000292476 SMAD2Q15796 467 aaKnown RBP16.8■□□□□ 0.28
CPSF4-201ENST00000292476 ANO7Q6IWH7 933 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 ZYG11AQ6WRX3 759 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 KDELC2Q7Z4H8 507 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 SLC25A41Q8N5S1 370 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 FBXO27Q8NI29 283 aa16.8■□□□□ 0.28
CPSF4-201ENST00000292476 ACTRT2Q8TDY3 377 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms