RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 KLHDC7BQ96G42 594 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 ARNT2Q9HBZ2 717 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 BPIFA1Q9NP55 256 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 GOLGA6AQ9NYA3 693 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 PCYOX1Q9UHG3 505 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 KCTD3Q9Y597 815 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 LRRK1Q38SD2 2015 aa12.74□□□□□ -0.37
SS18-202ENST00000269138 A6NNZ2 444 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 SUN1O94901 812 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 ECEL1O95672 775 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 CTSKP43235 329 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 C21orf59P57076 290 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 NXPH1P58417 271 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 PFN3P60673 137 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 MRPS25P82663 173 aaKnown RBP12.73□□□□□ -0.37
SS18-202ENST00000269138 C2orf54Q08AI8 447 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 PNCKQ6P2M8 343 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 KYAT3Q6YP21 454 aaKnown RBP12.73□□□□□ -0.37
SS18-202ENST00000269138 IQCHQ86VS3 1027 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 KIAA2013Q8IYS2 634 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 SLC22A18ASQ8N1D0 253 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 SPATA4Q8NEY3 305 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 CCHCR1Q8TD31 782 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 GRK7Q8WTQ7 553 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 KRT12Q99456 494 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 AGAP2Q99490 1192 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 RIOK2Q9BVS4 552 aaKnown RBP12.73□□□□□ -0.37
SS18-202ENST00000269138 GTPBP2Q9BX10 602 aaKnown RBP12.73□□□□□ -0.37
SS18-202ENST00000269138 IL21RQ9HBE5 538 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 FEZ2Q9UHY8 353 aaPredicted RBP12.73□□□□□ -0.37
SS18-202ENST00000269138 CDC23Q9UJX2 597 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 OR1A2Q9Y585 309 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 ARL5AQ9Y689 179 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 KNL1Q8NG31 2342 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 PI4KAP42356 2102 aa12.73□□□□□ -0.37
SS18-202ENST00000269138 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 ERI2A8K979 691 aaKnown RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 CCDC188H7C350 402 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 KIF2AO00139 706 aaPredicted RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 GAS8O95995 478 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 BPIP17213 487 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 PPP1R7Q15435 360 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 HLA-BQ31612 363 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 AASDHQ4L235 1098 aaPredicted RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 ANKRD22Q5VYY1 191 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 ALS2CLQ60I27 953 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 ESRP1Q6NXG1 681 aaKnown RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 GLT6D1Q7Z4J2 308 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 NRSN1Q8IZ57 195 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 GPR26Q8NDV2 337 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 SLCO2A1Q92959 643 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 FUBP1Q96AE4 644 aaKnown RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 AP2M1Q96CW1 435 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 SRPK1Q96SB4 655 aaKnown RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 APOOQ9BUR5 198 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 TRABDQ9H4I3 376 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 CASS4Q9NQ75 786 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 GPR27Q9NS67 375 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 PKD2L2Q9NZM6 624 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 HACD3Q9P035 362 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 IL17CQ9P0M4 197 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 FAM186AA6NE01 2351 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 PTPRZ1P23471 2315 aaPredicted RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 RALGAPA1Q6GYQ0 2036 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 GVINP1Q7Z2Y8 2422 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 CDX4O14627 284 aaPredicted RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 TTI1O43156 1089 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 SOD1P00441 154 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 TUBB4AP04350 444 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 SYPP08247 313 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 RABIFP47224 123 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 DR1Q01658 176 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 DPTQ07507 201 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 OVGP1Q12889 678 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 MTM1Q13496 603 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 PTK6Q13882 451 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 PDE1CQ14123 709 aaPredicted RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 KCNJ11Q14654 390 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 POU6F1Q14863 301 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 CERCAMQ5T4B2 595 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 RAET1GQ6H3X3 334 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 PPP1R21Q6ZMI0 780 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 MICALCLQ6ZW33 695 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 ZNF765Q7L2R6 523 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 LINC00523Q86TU6 105 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 BRSK1Q8TDC3 778 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 CPT1BQ92523 772 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 SKA1Q96BD8 255 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 LRRC45Q96CN5 670 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 TRIM51Q9BSJ1 452 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 EDEM2Q9BV94 578 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 LGR4Q9BXB1 951 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 FAM83DQ9H4H8 585 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 GAREM1Q9H706 876 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 EIF2B3Q9NR50 452 aaKnown RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 FNDC3AQ9Y2H6 1198 aaKnown RBP12.72□□□□□ -0.37
SS18-202ENST00000269138 PCDH15Q96QU1 1955 aa12.72□□□□□ -0.37
SS18-202ENST00000269138 RGSL1A5PLK6 1076 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 TPSB2P20231 275 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 HMGCLP35914 325 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms