RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CYP4F12Q9HCS2 524 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 MKS1Q9NXB0 559 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 CD84Q9UIB8 345 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 ERVW-1Q9UQF0 538 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 A0A0C4DFX4 3053 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 SERPINA4P29622 427 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 METAP1P53582 386 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 ACVR1Q04771 509 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 STX3Q13277 289 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 RNF43Q68DV7 783 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 MICALL1Q8N3F8 863 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 ISL2Q96A47 359 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 MRPL38Q96DV4 380 aaKnown RBP16.48■□□□□ 0.23
USP4-201ENST00000265560 ZFYVE1Q9HBF4 777 aa16.48■□□□□ 0.23
USP4-201ENST00000265560 SARS2Q9NP81 518 aaKnown RBP16.48■□□□□ 0.23
USP4-201ENST00000265560 A0A0J9YYE9 177 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 G3V2L1 256 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 TRBC1P01850 177 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 FBXO48Q5FWF7 155 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 ARSIQ5FYB1 569 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 RGS9BPQ6ZS82 235 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 FITM2Q8N6M3 262 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 SUV39H2Q9H5I1 410 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 KLHL14Q9P2G3 628 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 PKP3Q9Y446 797 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 TCF20Q9UGU0 1960 aaKnown RBP16.47■□□□□ 0.23
USP4-201ENST00000265560 STC1P52823 247 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 CARD16Q5EG05 197 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 TMEM151AQ8N4L1 468 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 MYADMQ96S97 322 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 IL17CQ9P0M4 197 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 STARD13Q9Y3M8 1113 aa16.47■□□□□ 0.23
USP4-201ENST00000265560 KIF26AQ9ULI4 1882 aaPredicted RBP16.47■□□□□ 0.23
USP4-201ENST00000265560 ITGB6P18564 788 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 HADHAP40939 763 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 TIAL1Q01085 375 aaKnown RBP eCLIP16.46■□□□□ 0.23
USP4-201ENST00000265560 RAB30Q15771 203 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 PTPRNQ16849 979 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 GPR149Q86SP6 731 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 SDCCAG8Q86SQ7 713 aaPredicted RBP16.46■□□□□ 0.23
USP4-201ENST00000265560 TBC1D1Q86TI0 1168 aaPredicted RBP16.46■□□□□ 0.23
USP4-201ENST00000265560 CLDN19Q8N6F1 224 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 PPP1R36Q96LQ0 422 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 FAM161BQ96MY7 647 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 ARL2BPQ9Y2Y0 163 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 RRP15Q9Y3B9 282 aaKnown RBP16.46■□□□□ 0.23
USP4-201ENST00000265560 PLK4O00444 970 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 NDUFS3O75489 264 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 LEFTY1O75610 366 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 KIAA0754O94854 1291 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 RALBP11234 206 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 KCNC1P48547 511 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 KIAA0408Q6ZU52 694 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 CCDC121Q6ZUS5 278 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 MRGPRX3Q96LB0 322 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 TSNARE1Q96NA8 513 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 GPR78Q96P69 363 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 SLC30A3Q99726 388 aa16.46■□□□□ 0.23
USP4-201ENST00000265560 GON4LQ3T8J9 2241 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 SLC9A3R1O14745 358 aaPredicted RBP16.45■□□□□ 0.22
USP4-201ENST00000265560 HTRA2O43464 458 aaPredicted RBP16.45■□□□□ 0.22
USP4-201ENST00000265560 NIPSNAP2O75323 286 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 POU4F1Q01851 419 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 SLC20A2Q08357 652 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 LRRC8EQ6NSJ5 796 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 VITQ6UXI7 678 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 TRPM8Q7Z2W7 1104 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 FGF14Q92915 247 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 PRR11Q96HE9 360 aaPredicted RBP16.45■□□□□ 0.22
USP4-201ENST00000265560 BOCQ9BWV1 1114 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 PNPOQ9NVS9 261 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 MYO10Q9HD67 2058 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 CCT8L1PA6NM43 557 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 SRP72O76094 671 aaKnown RBP16.45■□□□□ 0.22
USP4-201ENST00000265560 CTSLP07711 333 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 CISD3P0C7P0 127 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 KCNA5P22460 613 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 LHCGRP22888 699 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 RECQLP46063 649 aaPredicted RBP16.45■□□□□ 0.22
USP4-201ENST00000265560 GRIA4P48058 902 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 SLC1A6P48664 564 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 LRRC66Q68CR7 880 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 PARM1Q6UWI2 310 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 ALG9Q9H6U8 611 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 HPS4Q9NQG7 708 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 KNL1Q8NG31 2342 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 UBOX5O94941 541 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 PRAMEF1O95521 474 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 CHRNGP07510 517 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 HMGCLP35914 325 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 SOX9P48436 509 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 CSRP3P50461 194 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 NAGLUP54802 743 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 CRTC1Q6UUV9 634 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 AHI1Q8N157 1196 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 PHF21BQ96EK2 531 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 ECT2Q9H8V3 914 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 IGSF5Q9NSI5 407 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 CLDND1Q9NY35 253 aa16.45■□□□□ 0.22
USP4-201ENST00000265560 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms