RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZC3H7AQ8IWR0 971 aaKnown RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 PPP1R16AQ96I34 528 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ETAA1Q9NY74 926 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 EHD3Q9NZN3 535 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ERGIC3Q9Y282 383 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 NDST3O95803 873 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 BLMHQ13867 455 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 USP41Q3LFD5 358 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 PARP15Q460N3 678 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 LIN52Q52LA3 116 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 MTX3Q5HYI7 312 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 TRIM40Q6P9F5 258 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 CNSTQ6PJW8 725 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 ZYG11AQ6WRX3 759 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 RINLQ6ZS11 566 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 R3HCC1LQ7Z5L2 792 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 ZNF567Q8N184 647 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 WDR48Q8TAF3 677 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 TRPM4Q8TD43 1214 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 DQX1Q8TE96 717 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 S100ZQ8WXG8 99 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 IRGQQ8WZA9 623 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 LPGAT1Q92604 370 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SLCO2A1Q92959 643 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SLC9A7Q96T83 725 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 CIB1Q99828 191 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 FAIM2Q9BWQ8 316 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SPATA2Q9UM82 520 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 GNEQ9Y223 722 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 FAM208AQ9UK61 1670 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 RHOQP17081 205 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 GSTM5P46439 218 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 LSM3P62310 102 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 SMARCB1Q12824 385 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SPIDRQ14159 915 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 TAPT1Q6NXT6 567 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 DET1Q7L5Y6 550 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 OR2T34Q8NGX1 318 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 OR2T3Q8NH03 318 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 UBASH3BQ8TF42 649 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 CADM1Q9BY67 442 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 TMPRSS4Q9NRS4 437 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 ITGB1BP2Q9UKP3 347 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 MSI1O43347 362 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 LRIG2O94898 1065 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 IL6P05231 212 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 LYNP07948 512 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 CTPS1P17812 591 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 GNPDA1P46926 289 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 KHDC1Q4VXA5 237 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 FSTL4Q6MZW2 842 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 C11orf88Q6PI97 169 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 GATAD2AQ86YP4 633 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 DAW1Q8N136 415 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 CACTIN-AS1Q8N1I8 211 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 OR4K2Q8NGD2 314 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 PCDH19Q8TAB3 1148 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 ZNF384Q8TF68 577 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 HNRNPABQ99729 332 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 MUC13Q9H3R2 512 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 FANCEQ9HB96 536 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 TAS2R1Q9NYW7 299 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 DBTP11182 482 aaKnown RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 ZNF37AP17032 561 aaPredicted RBP10.75□□□□□ -0.69
CD44-201ENST00000263398 EPORP19235 508 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 ARMC3Q5W041 872 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 ARMC8Q8IUR7 673 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SLC35B2Q8TB61 432 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 BTBD9Q96Q07 612 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SLC39A8Q9C0K1 460 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 UNC93B1Q9H1C4 597 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 SLC25A51Q9H1U9 297 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 RAB26Q9ULW5 256 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 PCDHB1Q9Y5F3 818 aa10.75□□□□□ -0.69
CD44-201ENST00000263398 TOPAZ1Q8N9V7 1692 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 AFDNP55196 1824 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 M0R2N6 131 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 UBXN8O00124 270 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 TSPAN1O60635 241 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 CDK9P50750 372 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 PTSQ03393 145 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 PERM1Q5SV97 790 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 VWA5B1Q5TIE3 1220 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 ANXA8L1Q5VT79 327 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 GLYATQ6IB77 296 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 KLHL17Q6TDP4 642 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 CERS6Q6ZMG9 384 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 HIPK1Q86Z02 1210 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 LENG1Q96BZ8 264 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 PNPLA8Q9NP80 782 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 ARHGEF3Q9NR81 526 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 VPS4AQ9UN37 437 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 POLR3HQ9Y535 204 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 CBFA2T3O75081 653 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 FYNP06241 537 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 NELFEP18615 380 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 NUP62P37198 522 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 WDR4P57081 412 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 TAF10Q12962 218 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 AP5B1Q2VPB7 878 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms