RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 STOML1Q9UBI4 398 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 LHX3Q9UBR4 397 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 STK39Q9UEW8 545 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SLC7A8Q9UHI5 535 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 ARHGAP26Q9UNA1 814 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 SSX2IPQ9Y2D8 614 aa12.93□□□□□ -0.34
SPTLC1-201ENST00000262554 A0A088AWK7 358 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 SCAMP3O14828 347 aaKnown RBP12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 KRT36O76013 467 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 TIMP1P01033 207 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 SPATA31D3P0C874 917 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 CSF2RAP15509 400 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF37AP17032 561 aaPredicted RBP12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 PIK3R1P27986 724 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 CDC25CP30307 473 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 ABL2P42684 1182 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 PTDSS1P48651 473 aaKnown RBP12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 PLK1P53350 603 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 NFKB2Q00653 900 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 TIAL1Q01085 375 aaKnown RBP eCLIP12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 SATB1Q01826 763 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 SULT2A1Q06520 285 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 TRAF2Q12933 501 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 RALGPS1Q5JS13 557 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 RIPOR1Q6ZS17 1223 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 SPATA31D4Q6ZUB0 917 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 FRMD7Q6ZUT3 714 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 EFHBQ8N7U6 833 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 MRPS31Q92665 395 aaKnown RBP12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 L3HYPDHQ96EM0 354 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 RSRC1Q96IZ7 334 aaKnown RBP12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 TRMOQ9BU70 441 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 SYTL2Q9HCH5 934 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 TAS2R13Q9NYV9 303 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 HACD3Q9P035 362 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 MCM8Q9UJA3 840 aa12.92□□□□□ -0.34
SPTLC1-201ENST00000262554 RGSL1A5PLK6 1076 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 TMEM233B4DJY2 109 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 STX7O15400 261 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 GREM1O60565 184 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 SRP72O76094 671 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 RHOBTB1O94844 696 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 SP100P23497 879 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 FMO4P31512 558 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 CSKP41240 450 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 RAB44Q7Z6P3 723 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 CUZD1Q86UP6 607 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 SPNS2Q8IVW8 549 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 FAM217AQ8IXS0 508 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 RYBPQ8N488 228 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 DCAF4L2Q8NA75 395 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ACTRT2Q8TDY3 377 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 SH3RF2Q8TEC5 729 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 LPGAT1Q92604 370 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 PTERQ96BW5 349 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 CATSPER2Q96P56 530 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 LENG8Q96PV6 779 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 PANX3Q96QZ0 392 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 VPS51Q9UID3 782 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 G3BP2Q9UN86 482 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF510Q9Y2H8 683 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 OR51B4Q9Y5P0 310 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 GFRA2O00451 464 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 SDHDO14521 159 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 LILRB3O75022 631 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 LRG1P02750 347 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 JUNP05412 331 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 CKMP06732 381 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 PRSS56P0CW18 603 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ITGAXP20702 1163 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 GABRR2P28476 465 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 KCNC1P48547 511 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 TTPAP49638 278 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 EPHB1P54762 984 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ACTR3P61158 418 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 HERVK_113P63132 956 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 SLC34A1Q06495 639 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF678Q5SXM1 525 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 MFN1Q8IWA4 741 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 DEFB107AQ8IZN7 70 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 TTC16Q8NEE8 873 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 CEP70Q8NHQ1 597 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 RP9Q8TA86 221 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 RHEBL1Q8TAI7 183 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 USP13Q92995 863 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 MAELQ96JY0 434 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ZBED2Q9BTP6 218 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 C2orf49Q9BVC5 232 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ERVK-6Q9BXR3 956 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 GSTO2Q9H4Y5 243 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 TFB2MQ9H5Q4 396 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF385DQ9H6B1 395 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 MRGBPQ9NV56 204 aa12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 POLR3BQ9NW08 1133 aaPredicted RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 STX18Q9P2W9 335 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 FCF1Q9Y324 198 aaKnown RBP12.91□□□□□ -0.34
SPTLC1-201ENST00000262554 CCNT2O60583 730 aaKnown RBP12.9□□□□□ -0.34
SPTLC1-201ENST00000262554 FGF18O76093 207 aa12.9□□□□□ -0.34
SPTLC1-201ENST00000262554 SUPT7LO94864 414 aa12.9□□□□□ -0.34
SPTLC1-201ENST00000262554 PYGLP06737 847 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms