RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SLC44A4Q53GD3 710 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 XKR4Q5GH76 650 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 AGAP9Q5VTM2 703 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 SERINC5Q86VE9 423 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 CNTN4Q8IWV2 1026 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 DCBLD1Q8N8Z6 715 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 RIN3Q8TB24 985 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 PTERQ96BW5 349 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 RMND5BQ96G75 393 aaPredicted RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 ZNF597Q96LX8 424 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 RTP3Q9BQQ7 232 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 GSTO2Q9H4Y5 243 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 SUCOQ9UBS9 1254 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 EBF1Q9UH73 591 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 IPO11Q9UI26 975 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 USP22Q9UPT9 525 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 FNDC3AQ9Y2H6 1198 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 MYLKQ15746 1914 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 M0QZ92 97 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 NME4O00746 187 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 MATN3O15232 486 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 H6PDO95479 791 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 THP07101 528 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 LINC00032P0C843 101 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 HSPA1AP0DMV8 641 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 HSPA1BP0DMV9 641 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 PAMP19021 973 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 OXTRP30559 389 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 GEMP55040 296 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 SH3BP2P78314 561 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 MRPS6P82932 125 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 PFKPQ01813 784 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 POU4F1Q01851 419 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 SLC10A7Q0GE19 358 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 PLA2G4EQ3MJ16 856 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 INTS6LQ5JSJ4 861 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 HABP4Q5JVS0 413 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 TBCELQ5QJ74 424 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 LHX8Q68G74 356 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 GDF6Q6KF10 455 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 RANBP10Q6VN20 620 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 CIR1Q86X95 450 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 CLVS1Q8IUQ0 354 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 SCN4BQ8IWT1 228 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 GPR152Q8TDT2 470 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 CYGBQ8WWM9 190 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 ESAMQ96AP7 390 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 SEZ6LQ9BYH1 1024 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 MEAF6Q9HAF1 191 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 DUS2Q9NX74 493 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 UTP6Q9NYH9 597 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 RSL24D1Q9UHA3 163 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 TSR3Q9UJK0 312 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 MYRFQ9Y2G1 1151 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 TDRKHQ9Y2W6 561 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 TRIM17Q9Y577 477 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 RAD54BQ9Y620 910 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 PTCH2Q9Y6C5 1203 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 A0A087X1B8 175 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 A0A0J9YYE9 177 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 NCF1BA6NI72 391 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 NCF1CA8MVU1 366 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 H3BMM5 538 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 UBXN8O00124 270 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 SLC22A2O15244 555 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 ITGB1P05556 798 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 C8BP07358 591 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 HAPLN1P10915 354 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 NCF1P14598 390 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 ADSLP30566 484 aaPredicted RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 CCR1P32246 355 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 YAP1P46937 504 aaKnown RBP10.05□□□□□ -0.8
LIG3-201ENST00000262327 HSPA13P48723 471 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 ACLYP53396 1101 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 AIF1P55008 147 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 PFKFB4Q16877 469 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 TMEM259Q4ZIN3 620 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 KLC3Q6P597 504 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 POTEHQ6S545 545 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 CARM1Q86X55 608 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 FIBCD1Q8N539 461 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 DNAJB14Q8TBM8 379 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 DDI1Q8WTU0 396 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 GAB3Q8WWW8 586 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 VPS33AQ96AX1 596 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 FBXL20Q96IG2 436 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 TBATAQ96M53 351 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 IL12RB2Q99665 862 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 MUC3BQ9H195 1237 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 MID1IP1Q9NPA3 183 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 CD300AQ9UGN4 299 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 VWA7Q9Y334 891 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 ZNF711Q9Y462 761 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 TIMM22Q9Y584 194 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 TRPV2Q9Y5S1 764 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 RNF103-CHMP3A0A140T963 221 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 H3BNH8 94 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 PIP5K1BO14986 540 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 CNTN5O94779 1100 aa10.05□□□□□ -0.8
LIG3-201ENST00000262327 HMBSP08397 361 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms