RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 THAP11Q96EK4 314 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 CENPNQ96H22 339 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 SENP8Q96LD8 212 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MYRFLQ96LU7 910 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 TMEM74Q96NL1 305 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 INIPQ9NRY2 104 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 TUBA8Q9NY65 449 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 VWA7Q9Y334 891 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 FADS3Q9Y5Q0 445 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 NYNRINQ9P2P1 1898 aaKnown RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 ZNF236Q9UL36 1845 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 ASPDHA6ND91 283 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 H0Y858 1186 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MATN3O15232 486 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 RASAL1O95294 804 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 WISP3O95389 354 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 PSMA4P25789 261 aaKnown RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 DCKP27707 260 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MLLT10P55197 1068 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 STX1BP61266 288 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 SNX17Q15036 470 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 POLD3Q15054 466 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 CYP51A1Q16850 503 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 ZNF792Q3KQV3 632 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 FUT11Q495W5 492 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 SPRED1Q7Z699 444 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 CILP2Q8IUL8 1156 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 DDIASQ8IXT1 998 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 PCYOX1LQ8NBM8 494 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 GFM2Q969S9 779 aaKnown RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 LRRC58Q96CX6 371 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 DOK1Q99704 481 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MROH8Q9H579 483 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MID1IP1Q9NPA3 183 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 LTB4R2Q9NPC1 389 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 TLR9Q9NR96 1032 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 TBC1D13Q9NVG8 400 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 SH3GLB1Q9Y371 365 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MAGED1Q9Y5V3 778 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 TRIP12Q14669 1992 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 AQP12BA6NM10 295 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 UBXN8O00124 270 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 AP3B1O00203 1094 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 PSMD3O43242 534 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ZBTB11O95625 1053 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 S1PR4O95977 384 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 FUCA1P04066 466 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 RBP1P09455 135 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 GFAPP14136 432 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 DNAJB2P25686 324 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ELK4P28324 431 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 BMXP51813 675 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 OR4D1Q15615 310 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 PLA2G4EQ3MJ16 856 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 LCN8Q6JVE9 175 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ANKRD26P1Q6NSI1 321 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 C14orf80Q86SX3 495 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ZC3H7AQ8IWR0 971 aaKnown RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 AQP12AQ8IXF9 295 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 AFAP1L2Q8N4X5 818 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 OR6P1Q8NGX9 317 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 TRPC4APQ8TEL6 797 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 NUDT8Q8WV74 236 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 TWIST2Q8WVJ9 160 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 EMID1Q96A84 441 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 PLEKHA8Q96JA3 519 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 SEZ6LQ9BYH1 1024 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ENTPD7Q9NQZ7 604 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ACTR3BQ9P1U1 418 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 EVLQ9UI08 416 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 PTBP2Q9UKA9 531 aaKnown RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 PCDHA9Q9Y5H5 950 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 PPP2R3BQ9Y5P8 575 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 TCRBV5S2A0A599 114 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ANGPT2O15123 496 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 XPOTO43592 962 aaKnown RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 PAGE1O75459 146 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 F9P00740 461 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 SMIM10L2AP0DMW4 78 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 SMIM10L2BP0DMW5 78 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 HSD17B1P14061 328 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 PAMP19021 973 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 IL10P22301 178 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 GSK3BP49841 420 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 KPNA2P52292 529 aaKnown RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 GEMP55040 296 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 HERVK_113P63132 956 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 GALNT1Q10472 559 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 SLC14A2Q15849 920 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 PFKFB4Q16877 469 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 GEN1Q17RS7 908 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ZIK1Q3SY52 487 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 PAGE3Q5JUK9 113 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ZNF549Q6P9A3 640 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 KDELC1Q6UW63 502 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 CLYBLQ8N0X4 340 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 MINDY1Q8N5J2 469 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 PACRGLQ8N7B6 248 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 NAT16Q8N8M0 369 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms