RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RENBPP51606 427 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 FOXO4P98177 505 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC18A2Q05940 514 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NFATC3Q12968 1075 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RHEBQ15382 184 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NR6A1Q15406 480 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SEC23AQ15436 765 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TSPAN33Q86UF1 283 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 IFNL1Q8IU54 200 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 COL21A1Q96P44 957 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 COA1Q9GZY4 146 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DSN1Q9H410 356 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 BRD9Q9H8M2 597 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SAMHD1Q9Y3Z3 626 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHGA11Q9Y5H2 935 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MCIDASD6RGH6 385 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PDCD5O14737 125 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TPP1O14773 563 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 OR2B3O76000 313 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RASAL1O95294 804 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GLP2RO95838 553 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 S100A8P05109 93 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CSF1RP07333 972 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NCF1P14598 390 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SSTR1P30872 391 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SREBF1P36956 1147 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 BNIP3Q12983 259 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 VMACQ2NL98 169 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 KANK2Q63ZY3 851 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MFSD7Q6UXD7 560 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DPY19L3Q6ZPD9 716 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 R3HCC1LQ7Z5L2 792 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 LAPTM4BQ86VI4 370 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TICAM1Q8IUC6 712 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ADGRF4Q8IZF3 695 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RBFAQ8N0V3 343 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 LPGAT1Q92604 370 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RPRD1AQ96P16 312 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 POMKQ9H5K3 350 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CCDC167Q9P0B6 97 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHGB1Q9Y5G3 927 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SNCAIPQ9Y6H5 919 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PMF1-BGLAPU3KQ54 211 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC9A3R1O14745 358 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ARHGEF15O94989 841 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 KDELR1P24390 212 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PTGIRP43119 386 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MTMR2Q13614 643 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NDUFA9Q16795 377 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NKAPLQ5M9Q1 402 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZPBP2Q6X784 338 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 METTL25Q8N6Q8 603 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TTC16Q8NEE8 873 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PIH1D2Q8WWB5 315 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SCGB3A2Q96PL1 93 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NIPAL2Q9H841 368 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CDH7Q9ULB5 785 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CBY1Q9Y3M2 126 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RPL36Q9Y3U8 105 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SPEF2Q9C093 1822 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ITSN1Q15811 1721 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 A0A0B4J269 797 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF487B1APH4 448 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SPTLC1O15269 473 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PPP3CCP48454 512 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 JAM2P57087 298 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TGFBIQ15582 683 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TRAM1Q15629 374 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 AFTPHQ6ULP2 937 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC30A10Q6XR72 485 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GALNT13Q8IUC8 556 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RADILQ96JH8 1075 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DPYSL5Q9BPU6 564 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DPAGT1Q9H3H5 408 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 FAM83DQ9H4H8 585 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC9A8Q9Y2E8 581 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF335Q9H4Z2 1342 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 C2orf71A6NGG8 1288 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 AZIN1O14977 448 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CHRNGP07510 517 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TUBB3Q13509 450 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GALNT3Q14435 633 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PON3Q15166 354 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MAPKAPK3Q16644 382 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC35F1Q5T1Q4 408 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC22A16Q86VW1 577 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 C8orf48Q96LL4 319 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MTMR4Q9NYA4 1195 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MOSPD1Q9UJG1 213 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MGAT4DA6NG13 374 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 OR6C70A6NIJ9 312 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 OGTO15294 1046 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 FADS2O95864 444 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CD6P30203 668 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PNLIPRP1P54315 467 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PPP4CP60510 307 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 WSCD2Q2TBF2 565 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 INTS6LQ5JSJ4 861 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PYHIN1Q6K0P9 492 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF367Q7RTV3 350 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms