RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 RHBDD1Q8TEB9 315 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 SAP25Q8TEE9 199 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 NUS1Q96E22 293 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 TRIB3Q96RU7 358 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 SRPK1Q96SB4 655 aaKnown RBP20.72■□□□□ 0.91
CLN3-240ENST00000631023 FRMD8P1Q9BZ68 369 aaPredicted RBP20.72■□□□□ 0.91
CLN3-240ENST00000631023 DNAJC28Q9NX36 388 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 UBP1Q9NZI7 540 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 ANXA9O76027 345 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 NDST3O95803 873 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 EPOP01588 193 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 HTR1BP28222 390 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 EPHA8P29322 1005 aaPredicted RBP20.72■□□□□ 0.91
CLN3-240ENST00000631023 PTSQ03393 145 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 MPP3Q13368 585 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 FZD2Q14332 565 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 HSD11B1LQ7Z5J1 315 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 RAVER1Q8IY67 606 aaKnown RBP20.72■□□□□ 0.91
CLN3-240ENST00000631023 ATL2Q8NHH9 583 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 CCHCR1Q8TD31 782 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 DTD2Q96FN9 168 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 PPP1R2P1Q96PQ5 205 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 APOOQ9BUR5 198 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 TLR10Q9BXR5 811 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 USP29Q9HBJ7 922 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 TCRBV7S2A1N4TA0A589 114 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 H3BM21 787 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 GM2AP17900 193 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 MSNP26038 577 aaKnown RBP20.71■□□□□ 0.91
CLN3-240ENST00000631023 ETV3P41162 512 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 WNT3AP56704 352 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 HNRNPKP61978 463 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-240ENST00000631023 GALNT3Q14435 633 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 PRPSAP1Q14558 356 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 ANKRD20A2Q5SQ80 823 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 ANKRD20A1Q5TYW2 823 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 ANKRD20A3Q5VUR7 823 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 ESRP1Q6NXG1 681 aaKnown RBP20.71■□□□□ 0.91
CLN3-240ENST00000631023 MACC1Q6ZN28 852 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 Q6ZVL8 140 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 GATAD2AQ86YP4 633 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 REXO1L1PQ8IX06 675 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 SPATA13Q96N96 652 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 SMIM14Q96QK8 99 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 GBA3Q9H227 469 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 PCOLCE2Q9UKZ9 415 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 JRKLQ9Y4A0 524 aa20.71■□□□□ 0.91
CLN3-240ENST00000631023 C1orf232A0A0U1RR37 186 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 CACNB4O00305 520 aaPredicted RBP20.7■□□□□ 0.9
CLN3-240ENST00000631023 CSF2P04141 144 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 TSHRP16473 764 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 BNIP3Q12983 259 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 PNCKQ6P2M8 343 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 KDM7AQ6ZMT4 941 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 SLC35B2Q8TB61 432 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 CAMK1GQ96NX5 476 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 CDC6Q99741 560 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 MAGEE1Q9HCI5 957 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 R3HDM2Q9Y2K5 976 aaKnown RBP20.7■□□□□ 0.9
CLN3-240ENST00000631023 AAR2Q9Y312 384 aaKnown RBP20.7■□□□□ 0.9
CLN3-240ENST00000631023 OR1A2Q9Y585 309 aa20.7■□□□□ 0.9
CLN3-240ENST00000631023 LOC285095A0A1B0GVY8 99 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 C5orf60A6NFR6 353 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 CLDN7O95471 211 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 NME1P15531 152 aaKnown RBP20.69■□□□□ 0.9
CLN3-240ENST00000631023 TRIM23P36406 574 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 STC1P52823 247 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 GEMP55040 296 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 NFATC4Q14934 902 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 TRIP6Q15654 476 aaKnown RBP20.69■□□□□ 0.9
CLN3-240ENST00000631023 ZNF542PQ5EBM4 170 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 KDELC1Q6UW63 502 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 TECPR1Q7Z6L1 1165 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 NRSN1Q8IZ57 195 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 PLA2G15Q8NCC3 412 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 BTN2A2Q8WVV5 523 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 MAIP1Q8WWC4 291 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 OXNAD1Q96HP4 312 aaPredicted RBP20.69■□□□□ 0.9
CLN3-240ENST00000631023 FSD1LQ9BXM9 530 aa20.69■□□□□ 0.9
CLN3-240ENST00000631023 F5H423 210 aaPredicted RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 PDE2AO00408 941 aaPredicted RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 GIPC1O14908 333 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 HOXC4P09017 264 aaPredicted RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 KELP23276 732 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 STIP1P31948 543 aaKnown RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 DPTQ07507 201 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 CCDC173Q0VFZ6 552 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 TPRG1LQ5T0D9 272 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 NLRP8Q86W28 1048 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 FAM71DQ8N9W8 422 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 IPMKQ8NFU5 416 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 CCDC110Q8TBZ0 833 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 WDR26Q9H7D7 661 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 ZFYVE1Q9HBF4 777 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 TRMT1Q9NXH9 659 aaKnown RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 PKD2L2Q9NZM6 624 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 COL5A1P20908 1838 aaPredicted RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 LRP4O75096 1905 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 A0A0U1RQS6 177 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 GOLGA6CA6NDK9 693 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms