RNA–Protein interactions for RNA: ENST00000625662.2

CHD2-205, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 5,127 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-205	ENST00000625662	CSTF3	Q12996	717 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	INTS11	Q5TA45	600 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	TMEM132C	Q8N3T6	1108 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	DCAF4L2	Q8NA75	395 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	LNX1	Q8TBB1	728 aa	Predicted RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	P2RY11	Q96G91	374 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	ZSCAN5A	Q9BUG6	496 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	EFCAB1	Q9HAE3	211 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	WBP1L	Q9NX94	342 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	FCF1	Q9Y324	198 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	MFHAS1	Q9Y4C4	1052 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	USP27X	A6NNY8	438 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	DLD	P09622	509 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	MAT2A	P31153	395 aa	Known RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	UPP1	Q16831	310 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	GPR33	Q49SQ1	333 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	ENPP7	Q6UWV6	458 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	UBE2R2	Q712K3	238 aa	Predicted RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	CMTM8	Q8IZV2	173 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	CYP4Z2P	Q8N1L4	340 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	ZBTB2	Q8N680	514 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	KCTD15	Q96SI1	283 aa	Predicted RBP	11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	ZNF576	Q9H609	170 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	CHD4	Q14839	1912 aa		11.75	□□□□□ -0.53
CHD2-205	ENST00000625662	C16orf96	A6NNT2	1141 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	WBP4	O75554	376 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	CHN1	P15882	459 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	RPL26	P61254	145 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	BNC1	Q01954	994 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	NFYC	Q13952	458 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	MMAA	Q8IVH4	418 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	OR2AP1	Q8NGE2	309 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	RDH11	Q8TC12	318 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	BTN2A2	Q8WVV5	523 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PRRG4	Q9BZD6	226 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	GBA3	Q9H227	469 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	MRPL46	Q9H2W6	279 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	DKK3	Q9UBP4	350 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	CA14	Q9ULX7	337 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	RPL26L1	Q9UNX3	145 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PIAS3	Q9Y6X2	628 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	MYADML2	A6NDP7	307 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	UBD	O15205	165 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	VIPR1	P32241	457 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PLK1	P53350	603 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	STXBP1	P61764	594 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	DMPK	Q09013	629 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	STX4	Q12846	297 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	SPDYC	Q5MJ68	293 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	AMZ2	Q86W34	360 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TRIM69	Q86WT6	500 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	ACMSD	Q8TDX5	336 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	C17orf50	Q8WW18	174 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	POP5	Q969H6	163 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	EFHD2	Q96C19	240 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	LRRC46	Q96FV0	321 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TUBGCP5	Q96RT8	1024 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PTPN18	Q99952	460 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	NPHS2	Q9NP85	383 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	OGDHL	Q9ULD0	1010 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	DLG5	Q8TDM6	1919 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	CFAP73	A6NFT4	308 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TMX2-CTNND1	H3BSU7	103 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	SRPRA	P08240	638 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PKM	P14618	531 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PECAM1	P16284	738 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TPSB2	P20231	275 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	ACTR1B	P42025	376 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	NUP107	P57740	925 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	ACTR1A	P61163	376 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	RPL6	Q02878	288 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TPSAB1	Q15661	275 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	ATP13A4	Q4VNC1	1196 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	COLEC12	Q5KU26	742 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	DAB2IP	Q5VWQ8	1189 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	NIPAL1	Q6NVV3	410 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	NLRP14	Q86W24	1093 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PIP4K2C	Q8TBX8	421 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	HMCES	Q96FZ2	354 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	EBF3	Q9H4W6	596 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	MARCO	Q9UEW3	520 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	PIR	O00625	290 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	USP12	O75317	370 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	JMJD7	P0C870	316 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	S100A3	P33764	101 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	BUD31	P41223	144 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	RUNX3	Q13761	415 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	NOMO1	Q15155	1222 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	UBXN11	Q5T124	520 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	RNF19B	Q6ZMZ0	732 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	IFNE	Q86WN2	208 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	JOSD2	Q8TAC2	188 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	HCAR2	Q8TDS4	363 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	FAM3C	Q92520	227 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	MAGED4	Q96JG8	741 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	MRPL42	Q9Y6G3	142 aa	Known RBP	11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TCRBV21S2A2	A0A5A6	115 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662		C9IYK1	514 aa		11.74	□□□□□ -0.53
CHD2-205	ENST00000625662	TEX28	O15482	410 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms