RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 MTSS1O43312 755 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 SYNCRIPO60506 623 aaKnown RBP14.14□□□□□ -0.15
LDB3-209ENST00000623056 TGFB3P10600 412 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 CHRM3P20309 590 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 SLC6A2P23975 617 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 AXLP30530 894 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 LAMC2Q13753 1193 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 KYAT1Q16773 422 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 ZNF618Q5T7W0 954 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 BROXQ5VW32 411 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 OTOP3Q7RTS5 596 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 CHST13Q8NET6 341 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 SLC2A14Q8TDB8 520 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 C19orf60Q96EN9 201 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 MUS81Q96NY9 551 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 INTS10Q9NVR2 710 aaKnown RBP14.14□□□□□ -0.15
LDB3-209ENST00000623056 SPATA7Q9P0W8 599 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 SLC2A6Q9UGQ3 507 aa14.14□□□□□ -0.15
LDB3-209ENST00000623056 TCRBV5S2A0A599 114 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 H0Y858 1186 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 AP3B1O00203 1094 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ANGPT2O15123 496 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 OXSR1O95747 527 aaPredicted RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 JCHAINP01591 159 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 MYL3P08590 195 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 NCAM1P13591 858 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 CPB1P15086 417 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 LMO2P25791 158 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 TKTL1P51854 596 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 TPI1P60174 286 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 IGBP1P78318 339 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 UGT3A2Q3SY77 523 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 RBM20Q5T481 1227 aaKnown RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 SYPL2Q5VXT5 272 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ZNF470Q6ECI4 717 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 GTF2IRD2BQ6EKJ0 949 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 TBPL2Q6SJ96 375 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 CCDC80Q76M96 950 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 LINC00523Q86TU6 105 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 GTF2IRD2Q86UP8 949 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.13□□□□□ -0.15
LDB3-209ENST00000623056 HDAC11Q96DB2 347 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 NRBF2Q96F24 287 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 SH3YL1Q96HL8 342 aaPredicted RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 BEGAINQ9BUH8 593 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 AKTIPQ9H8T0 292 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 TLR9Q9NR96 1032 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 SLC27A5Q9Y2P5 690 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 LOC285556D6RIA3 1793 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 DOCK1Q14185 1865 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ZFC3H1O60293 1989 aaKnown RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 NUP205Q92621 2012 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 I6L893 689 aaPredicted RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 AURKAO14965 403 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 C22orf31O95567 290 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 MT-ND1P03886 318 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 SHMT2P34897 504 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ADRA1BP35368 520 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 POU4F1Q01851 419 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 GALNT1Q10472 559 aaPredicted RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 ZNF846Q147U1 533 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 AGAP9Q5VTM2 703 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 CADM3Q8N126 398 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 LRRC58Q96CX6 371 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 EIF2AQ9BY44 585 aaKnown RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.13□□□□□ -0.15
LDB3-209ENST00000623056 GIMAP2Q9UG22 337 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ZNF639Q9UID6 485 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ANAPC2Q9UJX6 822 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 ST14Q9Y5Y6 855 aa14.13□□□□□ -0.15
LDB3-209ENST00000623056 CCDC162PA2VCL2 907 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 CLDN25C9JDP6 229 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 H0YAE9 185 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 KDM1AO60341 852 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 ABCB7O75027 752 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 LDLRP01130 860 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 ALBP02768 609 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 NCK1P16333 377 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 DNAJB2P25686 324 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 EEF1DP29692 281 aaKnown RBP14.12□□□□□ -0.15
LDB3-209ENST00000623056 HPCAL1P37235 193 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 SEMA3BQ13214 749 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 SPCS2Q15005 226 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 PERM1Q5SV97 790 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 SLC2A7Q6PXP3 512 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 FRA10AC1Q70Z53 315 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 C2CD4AQ8NCU7 369 aaPredicted RBP14.12□□□□□ -0.15
LDB3-209ENST00000623056 SPATA22Q8NHS9 363 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 STARD8Q92502 1023 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 WNT8BQ93098 351 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 ZNF641Q96N77 438 aaPredicted RBP14.12□□□□□ -0.15
LDB3-209ENST00000623056 VAT1Q99536 393 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 PSD2Q9BQI7 771 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 TSPYL2Q9H2G4 693 aaPredicted RBP14.12□□□□□ -0.15
LDB3-209ENST00000623056 HOXC10Q9NYD6 342 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 STAP1Q9ULZ2 295 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 PCDHA9Q9Y5H5 950 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 DGKBQ9Y6T7 804 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 DYTNA2CJ06 578 aa14.12□□□□□ -0.15
LDB3-209ENST00000623056 SPTLC1O15269 473 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms