RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 VPS9D1Q9Y2B5 631 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 HLA-EP13747 358 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 CTSOP43234 321 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-213ENST00000620219 PIM3Q86V86 326 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 DCAF4L2Q8NA75 395 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 ACVR1CQ8NER5 493 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 ACMSDQ8TDX5 336 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 BRWD1Q9NSI6 2320 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-213ENST00000620219 PLIN3O60664 434 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 STAMBPO95630 424 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 APOA4P06727 396 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 CEBPBP17676 345 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 CCNHP51946 323 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-213ENST00000620219 KLHDC10Q6PID8 442 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 MYRFLQ96LU7 910 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 NUF2Q9BZD4 464 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 SYTL2Q9HCH5 934 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 ZFP14Q9HCL3 533 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 KLC4Q9NSK0 619 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 CDH22Q9UJ99 828 aa15.74■□□□□ 0.11
CPSF1-213ENST00000620219 ZCWPW2A0A1B0GU75 182 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 CFAP99D6REC4 459 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 CLDN7O95471 211 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 PRAMEF1O95521 474 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 STX1BP61266 288 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 POLR2LP62875 67 aaKnown RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 SYTL3Q4VX76 610 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 MANEALQ5VSG8 457 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 PACS2Q86VP3 889 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 ZC3HC1Q86WB0 502 aaKnown RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 PNPOQ9NVS9 261 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 NCKIPSDQ9NZQ3 722 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 INPP4BO15327 924 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 PRAMEF12O95522 483 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 RBP1P09455 135 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 LTA4HP09960 611 aaKnown RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 GRIA4P48058 902 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 VWA5B1Q5TIE3 1220 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 PGBD5Q8N414 524 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 POU5F2Q8N7G0 328 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 OR2AP1Q8NGE2 309 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 WRAP53Q9BUR4 548 aaKnown RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 BRD9Q9H8M2 597 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 SPHK2Q9NRA0 654 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 FETUBQ9UGM5 382 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 ARIH1Q9Y4X5 557 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 SCN5AQ14524 2016 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 GRK2P25098 689 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 TRAF2Q12933 501 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 PTCD2Q8WV60 388 aaKnown RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 MRPL46Q9H2W6 279 aaKnown RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 CCDC134Q9H6E4 229 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 MARCH4Q9P2E8 410 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-213ENST00000620219 CLEC4EQ9ULY5 219 aa15.73■□□□□ 0.11
CPSF1-213ENST00000620219 ANKRD12Q6UB98 2062 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 F8W8V4 182 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 SYNCRIPO60506 623 aaKnown RBP15.72■□□□□ 0.11
CPSF1-213ENST00000620219 ZDHHC11BP0C7U3 371 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 HOXD9P28356 352 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-213ENST00000620219 AP1S1P61966 158 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CCDC124Q96CT7 223 aaKnown RBP15.72■□□□□ 0.11
CPSF1-213ENST00000620219 GPR21Q99679 349 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 COPG2Q9UBF2 871 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CHEK2O96017 543 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 EPHX1P07099 455 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CCR2P41597 374 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 MAPK8P45983 427 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 RFTN1Q14699 578 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-213ENST00000620219 SNCBQ16143 134 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 TSNAXIP1Q2TAA8 658 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 ZNF789Q5FWF6 425 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 FSTL5Q8N475 847 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-213ENST00000620219 MYOCQ99972 504 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 SPECC1L-ADORA2AF8WAN1 911 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 FCHO1O14526 889 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CES1P23141 567 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 NME5P56597 212 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 POU4F1Q01851 419 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 RASA2Q15283 850 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CYTH1Q15438 398 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CGB2Q6NT52 195 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CLDN19Q8N6F1 224 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 BPIFB1Q8TDL5 484 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 ESAMQ96AP7 390 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 FAM92AA1XBS5 289 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 MAGEA6P43360 314 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 TTPAP49638 278 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 ARSIQ5FYB1 569 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 SH2D4BQ5SQS7 431 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 CYB5D1Q6P9G0 228 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 C6orf89Q6UWU4 347 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 DPY19L3Q6ZPD9 716 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 PLAC1Q9HBJ0 212 aa15.72■□□□□ 0.11
CPSF1-213ENST00000620219 SLC7A4O43246 635 aa15.71■□□□□ 0.11
CPSF1-213ENST00000620219 ITM2AO43736 263 aa15.71■□□□□ 0.11
CPSF1-213ENST00000620219 NFATC1O95644 943 aa15.71■□□□□ 0.11
CPSF1-213ENST00000620219 ADH5P11766 374 aa15.71■□□□□ 0.11
CPSF1-213ENST00000620219 NEK3P51956 506 aa15.71■□□□□ 0.11
CPSF1-213ENST00000620219 SLC18A2Q05940 514 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms