RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TSPAN19P0C672 248 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 ICAM3P32942 547 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 PPM1LQ5SGD2 360 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 ZC3H7AQ8IWR0 971 aaKnown RBP14.02□□□□□ -0.16
CPSF1-212ENST00000616140 CD101Q93033 1021 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 C19orf60Q96EN9 201 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 VPS35Q96QK1 796 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 ARMC7Q9H6L4 198 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 DPP7Q9UHL4 492 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 NR2E3Q9Y5X4 410 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 MYO9BQ13459 2157 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 A0A1W2PQH9 124 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 ADCY6O43306 1168 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 SEC24AO95486 1093 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 MT-ND1P03886 318 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 RPN2P04844 631 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 LYNP07948 512 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 PKMP14618 531 aaKnown RBP14.02□□□□□ -0.16
CPSF1-212ENST00000616140 OR1D2P34982 312 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 NDUFV1P49821 464 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 RGS21Q2M5E4 152 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 CLEC6AQ6EIG7 209 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 PARP8Q8N3A8 854 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 SLC35B2Q8TB61 432 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 ENKURQ8TC29 256 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 HOPXQ9BPY8 73 aaPredicted RBP14.02□□□□□ -0.16
CPSF1-212ENST00000616140 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.02□□□□□ -0.164e-7■■■□□ 15.3
CPSF1-212ENST00000616140 EPB41L1Q9H4G0 881 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 PLK2Q9NYY3 685 aa14.02□□□□□ -0.16
CPSF1-212ENST00000616140 VNN1O95497 513 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 DBTP11182 482 aaKnown RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 TOP3AQ13472 1001 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 FAM182AQ5T1J6 154 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF57Q68EA5 555 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 TXNRD3NBQ6F5E7 133 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF516Q92618 1163 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 BTN2A3PQ96KV6 586 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 DEPDC7Q96QD5 511 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 NFKBIZQ9BYH8 718 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 GBA3Q9H227 469 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 ZMYND8Q9ULU4 1186 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 BTBD3Q9Y2F9 522 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 WASF2Q9Y6W5 498 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 EPORP19235 508 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 CCL23P55773 120 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 MBTD1Q05BQ5 628 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 CA9Q16790 459 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 XKR6Q5GH73 641 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 RALGPS1Q5JS13 557 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 DSG4Q86SJ6 1040 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 RBFAQ8N0V3 343 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 CPSF7Q8N684 471 aaKnown RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 CLHC1Q8NHS4 586 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 HBEGFQ99075 208 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 NLNQ9BYT8 704 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 RNF208Q9H0X6 261 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 ATP6V1HQ9UI12 483 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF214Q9UL59 606 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 TMCO1Q9UM00 188 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 POLR3HQ9Y535 204 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-212ENST00000616140 KCNE2Q9Y6J6 123 aa14.02□□□□□ -0.17
CPSF1-212ENST00000616140 DPPA5A6NC42 116 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 METTL18O95568 372 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 MMP3P08254 477 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 CCNA2P20248 432 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 CDC42P60953 191 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 PURAQ00577 322 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 VPS26BQ4G0F5 336 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 LIN52Q52LA3 116 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 FNDC3BQ53EP0 1204 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 MACC1Q6ZN28 852 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 SPPL2CQ8IUH8 684 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 TBC1D21Q8IYX1 336 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 UBASH3BQ8TF42 649 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 COL26A1Q96A83 441 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 MRPL17Q9NRX2 175 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 IKZF3Q9UKT9 509 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 ENTPD4Q9Y227 616 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 TBC1D3BA6NDS4 549 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 ABLIM1O14639 778 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 SGTAO43765 313 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 DYRK3O43781 588 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 PAX3P23760 479 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 GPD2P43304 727 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 MAGEA10P43363 369 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 ABRQ12979 859 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 HIPK1Q86Z02 1210 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 PGAM4Q8N0Y7 254 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 PHF10Q8WUB8 498 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 SUSD6Q92537 303 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 SPRTNQ9H040 489 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 MYBPHLA2RUH7 354 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 DHX15O43143 795 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 ZBTB11O95625 1053 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 CNPP09543 421 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 PEX2P28328 305 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 L1CAMP32004 1257 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 SLC5A3P53794 718 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 TAS2R39P59534 338 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 DSC2Q02487 901 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms