RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 P2RY13Q9BPV8 354 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 OSBPL1AQ9BXW6 950 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 FBXO5Q9UKT4 447 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 SARDHQ9UL12 918 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 TMEM120BA0PK00 339 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 SPECC1L-ADORA2AF8WAN1 911 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 H7C0S8 307 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 SLC4A1P02730 911 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 MT-ND3P03897 115 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 HNRNPLP14866 589 aaKnown RBP eCLIP14.27□□□□□ -0.12
USP39-220ENST00000613444 KIR2DL1P43626 348 aaPredicted RBP14.27□□□□□ -0.12
USP39-220ENST00000613444 ABCG1P45844 678 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 PDE1BQ01064 536 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 THOC5Q13769 683 aaKnown RBP14.27□□□□□ -0.12
USP39-220ENST00000613444 BRAT1Q6PJG6 821 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 CRTC1Q6UUV9 634 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 SERPINA13PQ6UXR4 307 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 KIAA0408Q6ZU52 694 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 TSPAN33Q86UF1 283 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 STK40Q8N2I9 435 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 PLCD3Q8N3E9 789 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 BANPQ8N9N5 519 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 ACVR1CQ8NER5 493 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 GPR150Q8NGU9 434 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 ISL2Q96A47 359 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 SGSM3Q96HU1 749 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 FAM129BQ96TA1 746 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 C19orf43Q9BQ61 176 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 SSU72Q9NP77 194 aaKnown RBP14.27□□□□□ -0.12
USP39-220ENST00000613444 TXNDC16Q9P2K2 825 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 DKK3Q9UBP4 350 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 COL6A3P12111 3177 aa14.27□□□□□ -0.12
USP39-220ENST00000613444 GOLGA8RI6L899 631 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 PRPF4O43172 522 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP39-220ENST00000613444 SPAG7O75391 227 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 CLDN7O95471 211 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 LHCGRP22888 699 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 SPRP35270 261 aaPredicted RBP14.27□□□□□ -0.13
USP39-220ENST00000613444 CCNFP41002 786 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 MAGEA12P43365 314 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 CSRP3P50461 194 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 XIAPP98170 497 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 DNAJC3Q13217 504 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 PEX6Q13608 980 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 SEMA3AQ14563 771 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 UGP2Q16851 508 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 LEXMQ3ZCV2 418 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 ZNF805Q5CZA5 627 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 ZNF789Q5FWF6 425 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 IER5LQ5T953 404 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 TPRG1Q6ZUI0 275 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 GALNT7Q86SF2 657 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 SUGP1Q8IWZ8 645 aaKnown RBP14.27□□□□□ -0.13
USP39-220ENST00000613444 LMNTD2Q8IXW0 634 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 OR4L1Q8NH43 312 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 CALML6Q8TD86 181 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 VPS39Q96JC1 886 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 SRPK1Q96SB4 655 aaKnown RBP14.27□□□□□ -0.13
USP39-220ENST00000613444 SMC6Q96SB8 1091 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 SELENOSQ9BQE4 189 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 GPR63Q9BZJ6 419 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 RHOJQ9H4E5 214 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 CNOT10Q9H9A5 744 aaKnown RBP14.27□□□□□ -0.13
USP39-220ENST00000613444 ZFYVE1Q9HBF4 777 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 BPIFA1Q9NP55 256 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 FKBPLQ9UIM3 349 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 PPM1HQ9ULR3 514 aa14.27□□□□□ -0.13
USP39-220ENST00000613444 MTO1Q9Y2Z2 717 aaKnown RBP14.27□□□□□ -0.13
USP39-220ENST00000613444 PLXNB3Q9ULL4 1909 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 C1orf232A0A0U1RR37 186 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 STX7O15400 261 aaKnown RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 HAUS5O94927 633 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 ASGR2P07307 311 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 PYGBP11216 843 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 TIMP2P16035 220 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 TNFRSF4P43489 277 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 LEPRP48357 1165 aaKnown RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 METAP1P53582 386 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 SLC18A1P54219 525 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 SEMG2Q02383 582 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 ELAVL3Q14576 367 aaKnown RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 LDB1Q86U70 411 aaPredicted RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 DCLK2Q8N568 766 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 HCAR2Q8TDS4 363 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 ATXN7L3BQ96GX2 97 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 GPR22Q99680 433 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 HEBP1Q9NRV9 189 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 CACNA2D2Q9NY47 1150 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 SHISA7A6NL88 538 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 GAPDHSO14556 408 aaPredicted RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 CD3EAPO15446 510 aaKnown RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 S1PR4O95977 384 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 PRSS56P0CW18 603 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 CHN1P15882 459 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 FOXN2P32314 431 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 POLR2LP62875 67 aaKnown RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 GUCY1A3Q02108 690 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 PTSQ03393 145 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 LRRC73Q5JTD7 316 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 USP45Q70EL2 814 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms