RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TEP1Q99973 2627 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 LRBAP50851 2863 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 PMS2P1A4D2B8 440 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 POM121CA8CG34 1229 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 F8VZ95 297 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 DAPK3O43293 454 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 DUX1O43812 170 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 PRAMEF11O60813 436 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 CYP1A1P04798 512 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 CELA2BP08218 269 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 CYP2A6P11509 494 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 HOXB1P14653 301 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 ALDH4A1P30038 563 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 RFC1P35251 1148 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 UGT1A3P35503 534 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 GCGRP47871 477 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 ZNF143P52747 638 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 B4GALNT1Q00973 533 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 ABHD18Q0P651 414 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 C16orf72Q14CZ0 275 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 AMZ1Q400G9 498 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 FKBP15Q5T1M5 1219 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 KLHDC7AQ5VTJ3 777 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 TAF3Q5VWG9 929 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 PNCKQ6P2M8 343 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 SCYL2Q6P3W7 929 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 TMEM71Q6P5X7 295 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 SRLQ86TD4 932 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 PSTKQ8IV42 348 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 RAVER1Q8IY67 606 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 NLGN4XQ8N0W4 816 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 EMC1Q8N766 993 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 C3orf20Q8ND61 904 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 ANKRD20A12PQ8NF67 263 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 NLGN4YQ8NFZ3 816 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 OR10G6Q8NH81 332 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 NSMCE1Q8WV22 266 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 CPA5Q8WXQ8 436 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 OR1E3Q8WZA6 343 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 FUBP1Q96AE4 644 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 ECHDC3Q96DC8 303 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 AHCYL2Q96HN2 611 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 CALR3Q96L12 384 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 ZNF599Q96NL3 588 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 TMEM168Q9H0V1 697 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 GPN2Q9H9Y4 310 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 CARS2Q9HA77 564 aaKnown RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 SP110Q9HB58 689 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 FGF22Q9HCT0 170 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 PRM3Q9NNZ6 103 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 TMPRSS4Q9NRS4 437 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 NDFIP2Q9NV92 336 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 SLC39A1Q9NY26 324 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 KCNK4Q9NYG8 393 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 ADAM22Q9P0K1 906 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 FOXJ2Q9P0K8 574 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 LHX3Q9UBR4 397 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 PNMA8BQ9ULN7 279 aaPredicted RBP6.3□□□□□ -1.4
CUX1-220ENST00000607092 KCTD3Q9Y597 815 aa6.3□□□□□ -1.4
CUX1-220ENST00000607092 IGHV5-10-1A0A0J9YXX1 117 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 TMEM202A6NGA9 273 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 SIGLEC16A6NMB1 481 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 OR5K4A6NMS3 321 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 FAM72CH0Y354 149 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 MKRN2OSH3BPM6 223 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 PYCARD-AS1I3L0S3 204 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 INPP4BO15327 924 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 CREB3O43889 395 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 RAD1O60671 282 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 PALMO75781 387 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 PIGNO95427 931 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 RECKO95980 971 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 IVLP07476 585 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 MMEP08473 750 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 THRAP10827 490 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 CR2P20023 1033 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 CA4P22748 312 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 VARSP26640 1264 aaKnown RBP6.29□□□□□ -1.4
CUX1-220ENST00000607092 ETV5P41161 510 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 FASLGP48023 281 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 PPM1FP49593 454 aaPredicted RBP6.29□□□□□ -1.4
CUX1-220ENST00000607092 HDAC4P56524 1084 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 TPI1P60174 286 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 GUCA2AQ02747 115 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 DPTQ07507 201 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 IL10RBQ08334 325 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 KLRB1Q12918 225 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 MAP7Q14244 749 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 ZNF235Q14590 738 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 ACOX1Q15067 660 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 CYTH1Q15438 398 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 C15orf59Q2T9L4 293 aaPredicted RBP6.29□□□□□ -1.4
CUX1-220ENST00000607092 LRRC73Q5JTD7 316 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 FAM72AQ5TYM5 149 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 FAM72DQ6L9T8 149 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 DNAJC24Q6P3W2 148 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 DCUN1D2Q6PH85 259 aa6.29□□□□□ -1.4
CUX1-220ENST00000607092 WDR74Q6RFH5 385 aaPredicted RBP6.29□□□□□ -1.4
CUX1-220ENST00000607092 LIPIQ6XZB0 460 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms