RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 EFSO43281 561 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 HTRA2O43464 458 aaPredicted RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 SOCS5O75159 536 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 PEX11BO96011 259 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 CPP00450 1065 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 MYCLP1P12525 358 aaPredicted RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 SKILP12757 684 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 TCF4P15884 667 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 PNLIPP16233 465 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 ITIH1P19827 911 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 VIPR1P32241 457 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 PCK1P35558 622 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 ARL4AP40617 200 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 PRKCIP41743 596 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 ZFP36L1Q07352 338 aaKnown RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 TGIF1Q15583 401 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 DPYSL2Q16555 572 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 TSR1Q2NL82 804 aaKnown RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 TMCO3Q6UWJ1 677 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 POLNQ7Z5Q5 900 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 PGBD5Q8N414 524 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 KIAA1524Q8TCG1 905 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 SPOCK2Q92563 424 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 HSPH1Q92598 858 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 TRIM11Q96F44 468 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 NUDCD1Q96RS6 583 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 CARS2Q9HA77 564 aaKnown RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 NOD2Q9HC29 1040 aa13.17□□□□□ -0.3
RPS28-204ENST00000602140 MRPL47Q9HD33 250 aaKnown RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 PHPT1Q9NRX4 125 aaPredicted RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 SPATS2LQ9NUQ6 558 aaKnown RBP13.17□□□□□ -0.3
RPS28-204ENST00000602140 A0A1W2PQ67 120 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 A0A1W2PQC6 194 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 J3QKU1 62 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 NVLO15381 856 aaKnown RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 NUDT21O43809 227 aaKnown RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 MAFKO60675 156 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 HEXIM1O94992 359 aaKnown RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 MBD3O95983 291 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 FUCA1P04066 466 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 CEACAM5P06731 702 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 MYBL1P10243 752 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 CCNB1P14635 433 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 CR2P20023 1033 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 HSPA9P38646 679 aaKnown RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 ETV3P41162 512 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 MAZP56270 477 aaKnown RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 MAXP61244 160 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 TRAF2Q12933 501 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 BOLA3Q53S33 107 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 TMPRSS9Q7Z410 1059 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 HSD11B1LQ7Z5J1 315 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 HEATR4Q86WZ0 1026 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 GPBAR1Q8TDU6 330 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 NAP1L5Q96NT1 182 aaPredicted RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 CSPG4P5Q96PW8 444 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 MGME1Q9BQP7 344 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 BPIFA3Q9BQP9 254 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 TEX101Q9BY14 249 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 ISCUQ9H1K1 167 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.16□□□□□ -0.3
RPS28-204ENST00000602140 TMEM63CQ9P1W3 806 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 ACSL6Q9UKU0 697 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 PHTF1Q9UMS5 762 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 SETXQ7Z333 2677 aaKnown RBP13.16□□□□□ -0.3
RPS28-204ENST00000602140 TENM4Q6N022 2769 aa13.16□□□□□ -0.3
RPS28-204ENST00000602140 GOLGA6CA6NDK9 693 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 GOLGA6BA6NDN3 693 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 NPIPB15A6NHN6 443 aaPredicted RBP13.15□□□□□ -0.3
RPS28-204ENST00000602140 SMTNL1A8MU46 457 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 B4GAT1O43505 415 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 FGF1P05230 155 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 GOLGA6DP0CG33 693 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 RARAP10276 462 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 CYP2A6P11509 494 aaPredicted RBP13.15□□□□□ -0.3
RPS28-204ENST00000602140 LHCGRP22888 699 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 NFKBIAP25963 317 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 AK4P27144 223 aaPredicted RBP13.15□□□□□ -0.3
RPS28-204ENST00000602140 ETV5P41161 510 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 GNPDA1P46926 289 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 MAPK10P53779 464 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 CDK3Q00526 305 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 B4GALNT1Q00973 533 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 ILF3Q12906 894 aaKnown RBP eCLIP13.15□□□□□ -0.3
RPS28-204ENST00000602140 SRSF6Q13247 344 aaKnown RBP13.15□□□□□ -0.3
RPS28-204ENST00000602140 PTPRRQ15256 657 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 MAP9Q49MG5 647 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 PHF19Q5T6S3 580 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 TXNRD3NBQ6F5E7 133 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 NRROSQ86YC3 692 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 SLITRK4Q8IW52 837 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 CBARPQ8N350 705 aaPredicted RBP13.15□□□□□ -0.3
RPS28-204ENST00000602140 BBS5Q8N3I7 341 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 ATPAF2Q8N5M1 289 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 ZDHHC1Q8WTX9 485 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 NSMCE1Q8WV22 266 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 PTCD2Q8WV60 388 aaKnown RBP13.15□□□□□ -0.3
RPS28-204ENST00000602140 TMEM159Q96B96 161 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 DTD2Q96FN9 168 aa13.15□□□□□ -0.3
RPS28-204ENST00000602140 MED8Q96G25 268 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms