RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 A6NNZ2 444 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 MEI4A8MW99 385 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 UPK3BL1B0FP48 263 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TBC1D3LB9A6J9 549 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 UPK3BL2E5RIL1 263 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 PSMD3O43242 534 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 PLRG1O43660 514 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 SUN1O94901 812 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 AP2A1O95782 977 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 CPP00450 1065 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TBC1D3HP0C7X1 549 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 NUDT1P36639 197 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 ELK3P41970 407 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 CD86P42081 329 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 GYS2P54840 703 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 ADPRHP54922 357 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 GEMP55040 296 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 GPX6P59796 221 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 RPL26P61254 145 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 MAGOHP61326 146 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 DSC2Q02487 901 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TERF2Q15554 542 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 LONRF1Q17RB8 773 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 KLHL38Q2WGJ6 581 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TUBB8Q3ZCM7 444 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 WDR45BQ5MNZ6 344 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 SYCP2LQ5T4T6 812 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 AGBL4Q5VU57 503 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TBC1D3GQ6DHY5 549 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TBC1D3CQ6IPX1 549 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 NEK5Q6P3R8 708 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 LRRC8BQ6P9F7 803 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 USP45Q70EL2 814 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 PARS2Q7L3T8 475 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 CAMK1DQ8IU85 385 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 PALM2Q8IXS6 379 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TBC1D3Q8IZP1 549 aaPredicted RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.12□□□□□ -0.79
UPF1-213ENST00000601981 CNTD1Q8N815 330 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 CADM4Q8NFZ8 388 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 IFT43Q96FT9 208 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 IMP4Q96G21 291 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 ZC3H10Q96K80 434 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 FCRL5Q96RD9 977 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 GPR174Q9BXC1 333 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 FSD1LQ9BXM9 530 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 ACSS3Q9H6R3 686 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 EURLQ9NYK6 297 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 SLC24A2Q9UI40 661 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 PHTF1Q9UMS5 762 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 NOVA2Q9UNW9 492 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 RPL26L1Q9UNX3 145 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 CHMP2BQ9UQN3 213 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 INVSQ9Y283 1065 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 AAR2Q9Y312 384 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 PCDHB9Q9Y5E1 797 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 RAI2Q9Y5P3 530 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 R4GN57 208 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 SDK1Q7Z5N4 2213 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 LRRK1Q38SD2 2015 aa10.12□□□□□ -0.79
UPF1-213ENST00000601981 TNRC6BQ9UPQ9 1833 aaKnown RBP10.12□□□□□ -0.79
UPF1-213ENST00000601981 GON4LQ3T8J9 2241 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 DOCK9Q9BZ29 2069 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 SMIM23A6NLE4 172 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 AP3B1O00203 1094 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 HTRA2O43464 458 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 HRO43593 1189 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 TSPAN6O43657 245 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 AP1G1O43747 822 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 PCDH8O95206 1070 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 PGLSO95336 258 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 CYP2A6P11509 494 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 NFKB1P19838 968 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 STX2P32856 288 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 ACSL1P33121 698 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 CD68P34810 354 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 NBL1P41271 181 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 SLCO1A2P46721 670 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 DHPSP49366 369 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 PPP2R2AP63151 447 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 MPP3Q13368 585 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 UGP2Q16851 508 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 PLK5Q496M5 336 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 HP1BP3Q5SSJ5 553 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 PIP5KL1Q5T9C9 394 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 LYSMD4Q5XG99 296 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 PMS2CLQ68D20 193 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 KCTD11Q693B1 232 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 KIAA1161Q6NSJ0 714 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 TAOK1Q7L7X3 1001 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 RABEPKQ7Z6M1 372 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 CCNJLQ8IV13 435 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 IGDCC3Q8IVU1 814 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 AGGF1Q8N302 714 aaeCLIP10.11□□□□□ -0.79
UPF1-213ENST00000601981 FAM160A2Q8N612 972 aaPredicted RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 PDCD7Q8N8D1 485 aaKnown RBP10.11□□□□□ -0.79
UPF1-213ENST00000601981 ARRDC2Q8TBH0 407 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 CXorf40AQ8TE69 158 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 SPOCK2Q92563 424 aa10.11□□□□□ -0.79
UPF1-213ENST00000601981 FAM131CQ96AQ9 280 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms