RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ELOCQ15369 112 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 ARMC12Q5T9G4 340 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 DENND2CQ68D51 928 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 SLC9A4Q6AI14 798 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 PNCKQ6P2M8 343 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 SARM1Q6SZW1 724 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 RFLNAQ6ZTI6 216 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 USP45Q70EL2 814 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 RD3Q7Z3Z2 195 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 HEATR4Q86WZ0 1026 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 CNGA4Q8IV77 575 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 SFTPA2Q8IWL1 248 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 RHOT2Q8IXI1 618 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 FSTL5Q8N475 847 aaPredicted RBP13.06□□□□□ -0.32
LIG1-212ENST00000596549 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.06□□□□□ -0.32
LIG1-212ENST00000596549 ARL10Q8N8L6 244 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 PTCD2Q8WV60 388 aaKnown RBP13.06□□□□□ -0.32
LIG1-212ENST00000596549 SCRN2Q96FV2 425 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 RNF157Q96PX1 679 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 DEPDC7Q96QD5 511 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 EVA1BQ9NVM1 165 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 ZNHIT6Q9NWK9 470 aaKnown RBP13.06□□□□□ -0.32
LIG1-212ENST00000596549 NCKIPSDQ9NZQ3 722 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 SIRPGQ9P1W8 387 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 HYOU1Q9Y4L1 999 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 AK5Q9Y6K8 562 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 A0A0J9YYE9 177 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 PRSS38A1L453 326 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 CAPN8A6NHC0 703 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 ZNF487B1APH4 448 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 PRLP01236 227 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 TRBC1P01850 177 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 KRT1P04264 644 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 HOXC4P09017 264 aaPredicted RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 TPM1P09493 284 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 CYP2A6P11509 494 aaPredicted RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 MYCLP1P12525 358 aaPredicted RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 CTSEP14091 401 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 PPIDQ08752 370 aaKnown RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 ITKQ08881 620 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 ISXQ2M1V0 245 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 LRRC66Q68CR7 880 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 Q6ZVL8 140 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 MAP7D3Q8IWC1 876 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 CCDC13Q8IYE1 715 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 TC2NQ8N9U0 490 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 CCL4L1Q8NHW4 92 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 SNIP1Q8TAD8 396 aaKnown RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 HNRNPLLQ8WVV9 542 aaKnown RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 NAT6Q93015 286 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 CCDC42Q96M95 316 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 OLFM3Q96PB7 478 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 DCBLD2Q96PD2 775 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 LGMNQ99538 433 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 CCDC3Q9BQI4 270 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 TEX101Q9BY14 249 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 FRMD8Q9BZ67 464 aaPredicted RBP13.05□□□□□ -0.32
LIG1-212ENST00000596549 TMEM168Q9H0V1 697 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 RBM22Q9NW64 420 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIG1-212ENST00000596549 AMACRQ9UHK6 382 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 TTLL3Q9Y4R7 772 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 ENTPD2Q9Y5L3 495 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 LOC400499M0QZD8 3231 aa13.05□□□□□ -0.32
LIG1-212ENST00000596549 FAM208BQ5VWN6 2430 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 PMS2P1A4D2B8 440 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 AKR1B15C9JRZ8 316 aaPredicted RBP13.04□□□□□ -0.32
LIG1-212ENST00000596549 KCNK1O00180 336 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 NOBOXO60393 691 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 USP12O75317 370 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 TNFP01375 233 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 FUCA1P04066 466 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 MPOP05164 745 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 MMP2P08253 660 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CCNB1P14635 433 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 HOXB3P14651 431 aaPredicted RBP13.04□□□□□ -0.32
LIG1-212ENST00000596549 EIF2S3P41091 472 aaKnown RBP13.04□□□□□ -0.32
LIG1-212ENST00000596549 ARHGAP25P42331 645 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 GABREP78334 506 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CDK3Q00526 305 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 TCEAL1Q15170 157 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 TBC1D25Q3MII6 688 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 ZFYVE27Q5T4F4 411 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 LVRNQ6Q4G3 990 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 NPNTQ6UXI9 565 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 TECPR1Q7Z6L1 1165 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 VSIG1Q86XK7 387 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 GKN2Q86XP6 184 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CNTD1Q8N815 330 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 GPR156Q8NFN8 814 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 ATL2Q8NHH9 583 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CCDC74AQ96AQ1 378 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CEP41Q9BYV8 373 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 GOLPH3Q9H4A6 298 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CYP4F12Q9HCS2 524 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CD84Q9UIB8 345 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 PADI4Q9UM07 663 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 TFR2Q9UP52 801 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 GPR34Q9UPC5 381 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 DOLKQ9UPQ8 538 aa13.04□□□□□ -0.32
LIG1-212ENST00000596549 CHKBQ9Y259 395 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms