RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CPP00450 1065 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 KELP23276 732 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 TAS2R40P59535 323 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 KIAA1024LP59773 190 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 DPYSL3Q14195 570 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 CNGA3Q16281 694 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 PNCKQ6P2M8 343 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 BBS5Q8N3I7 341 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 GPR156Q8NFN8 814 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 LRRN4Q8WUT4 740 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 COQ10AQ96MF6 247 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 FGF22Q9HCT0 170 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 NT5MQ9NPB1 228 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 KCTD5Q9NXV2 234 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 RCOR3Q9P2K3 495 aaPredicted RBP20.5■□□□□ 0.87
SHMT1-209ENST00000582653 RP1P56715 2156 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 PTPRQQ9UMZ3 2332 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 CCDC187A0A096LP49 1063 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 A0A0U1RQS6 177 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 PROSCO94903 275 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 VIPR1P32241 457 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 PDX1P52945 283 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 CCL7P80098 99 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 ITKQ08881 620 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 NCBP2-AS2Q69YL0 99 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 CBARPQ8N350 705 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-209ENST00000582653 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHMT1-209ENST00000582653 TEX26Q8N6G2 289 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 KYQ8NBH2 561 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 KCTD6Q8NC69 237 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 CCDC74AQ96AQ1 378 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 LIN37Q96GY3 246 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-209ENST00000582653 SMIM14Q96QK8 99 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 GFM1Q96RP9 751 aaKnown RBP20.49■□□□□ 0.87
SHMT1-209ENST00000582653 PHTF1Q9UMS5 762 aa20.49■□□□□ 0.87
SHMT1-209ENST00000582653 PDE2AO00408 941 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-209ENST00000582653 HEXIM1O94992 359 aaKnown RBP20.48■□□□□ 0.87
SHMT1-209ENST00000582653 TNFSF15O95150 251 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 PRB1P04280 392 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 PDHA1P08559 390 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 H2AFZP0C0S5 128 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 PNLIPP16233 465 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 GLB1P16278 677 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 CTPS1P17812 591 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 PTMSP20962 102 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 LHCGRP22888 699 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 PAFAH1B3Q15102 231 aaKnown RBP20.48■□□□□ 0.87
SHMT1-209ENST00000582653 SLC18A3Q16572 532 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 ASTE1Q2TB18 679 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-209ENST00000582653 ANKRD20A8PQ5CZ79 823 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 FOXR1Q6PIV2 292 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 H2AFVQ71UI9 128 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 HSD11B1LQ7Z5J1 315 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 TAF8Q7Z7C8 310 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 CLEC14AQ86T13 490 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 TSPAN33Q86UF1 283 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 SFTPA2Q8IWL1 248 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 FAM46DQ8NEK8 389 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 SNRNP27Q8WVK2 155 aaKnown RBP20.48■□□□□ 0.87
SHMT1-209ENST00000582653 NUS1Q96E22 293 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 SEMA3CQ99985 751 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 TMEM168Q9H0V1 697 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 LRRN3Q9H3W5 708 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 SYNDIG1Q9H7V2 258 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 CPNE5Q9HCH3 593 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 MOSPD1Q9UJG1 213 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 APPL1Q9UKG1 709 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 LRP4O75096 1905 aa20.48■□□□□ 0.87
SHMT1-209ENST00000582653 A0A1W2PQM1 296 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 NPIPB15A6NHN6 443 aaPredicted RBP20.47■□□□□ 0.87
SHMT1-209ENST00000582653 ERVH48-1M5A8F1 160 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 PGLSO95336 258 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 TPM3P06753 285 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 NFKBIAP25963 317 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 ETV3P41162 512 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 GARSP41250 739 aaKnown RBP20.47■□□□□ 0.87
SHMT1-209ENST00000582653 RHDQ02161 417 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 GALNT2Q10471 571 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 EIF3IQ13347 325 aaKnown RBP20.47■□□□□ 0.87
SHMT1-209ENST00000582653 IHHQ14623 411 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 RALGPS1Q5JS13 557 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 ARMC12Q5T9G4 340 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 ARHGAP40Q5TG30 622 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 SPECC1LQ69YQ0 1117 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 PCSK4Q6UW60 755 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 OR8K1Q8NGG5 319 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 CCL4L1Q8NHW4 92 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 PIH1D2Q8WWB5 315 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 CTNNBL1Q8WYA6 563 aaPredicted RBP20.47■□□□□ 0.87
SHMT1-209ENST00000582653 WBP1Q96G27 269 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 WDR26Q9H7D7 661 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 CYP4F12Q9HCS2 524 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 UVRAGQ9P2Y5 699 aa20.47■□□□□ 0.87
SHMT1-209ENST00000582653 PMS2P1A4D2B8 440 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 C1QL1O75973 258 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 ITGA2BP08514 1039 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 DSC2Q02487 901 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 VAC14Q08AM6 782 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 TSR1Q2NL82 804 aaKnown RBP20.46■□□□□ 0.87
SHMT1-209ENST00000582653 RFLNAQ6ZTI6 216 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms