RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SLC6A13Q9NSD5 602 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 ZNF224Q9NZL3 707 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 HAO1Q9UJM8 370 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 TTC7AQ9ULT0 858 aaPredicted RBP6.36□□□□□ -1.39
SS18-214ENST00000580003 KDM3AQ9Y4C1 1321 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 A0A1W2PPH5 198 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 EIF3CLB5ME19 914 aaKnown RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 UBL4AP11441 157 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 MAOAP21397 527 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 RARSP54136 660 aaKnown RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 G3BP1Q13283 466 aaKnown RBP eCLIP6.35□□□□□ -1.39
SS18-214ENST00000580003 FGFBP1Q14512 234 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 DRAP1Q14919 205 aaPredicted RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 COL28A1Q2UY09 1125 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 EIF2S3LQ2VIR3 472 aaKnown RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 GGNBP1Q5YKI7 109 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 CDC73Q6P1J9 531 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 R3HCC1LQ7Z5L2 792 aaKnown RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 WDR63Q8IWG1 891 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 SPATA6LQ8N4H0 392 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 MAGEC3Q8TD91 643 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 WFIKKN2Q8TEU8 576 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 RND1Q92730 232 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 TANKQ92844 425 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 GTF3C6Q969F1 213 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 PPM1MQ96MI6 270 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 IL17FQ96PD4 163 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 FAM110AQ9BQ89 295 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 IFIH1Q9BYX4 1025 aaKnown RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 RANBP17Q9H2T7 1088 aaKnown RBP6.35□□□□□ -1.39
SS18-214ENST00000580003 ASAH2Q9NR71 780 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 VDAC3Q9Y277 283 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 CEPT1Q9Y6K0 416 aa6.35□□□□□ -1.39
SS18-214ENST00000580003 AKR1B15C9JRZ8 316 aaPredicted RBP6.34□□□□□ -1.39
SS18-214ENST00000580003 RFPL2O75678 378 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 ATP1A3P13637 1013 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 RRM1P23921 792 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 ELF1P32519 619 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 KRT9P35527 623 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 SEC61BP60468 96 aaKnown RBP6.34□□□□□ -1.39
SS18-214ENST00000580003 ZNF155Q12901 538 aaPredicted RBP6.34□□□□□ -1.39
SS18-214ENST00000580003 KRT24Q2M2I5 525 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 USP41Q3LFD5 358 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 JAKMIP3Q5VZ66 844 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 PLEKHA7Q6IQ23 1121 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 KCTD18Q6PI47 426 aaPredicted RBP6.34□□□□□ -1.39
SS18-214ENST00000580003 QSOX2Q6ZRP7 698 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 HAPLN4Q86UW8 402 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 NR2C2APQ86WQ0 139 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 CNTROBQ8N137 903 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 METTL6Q8TCB7 284 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 SLC26A6Q9BXS9 759 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 KIF9Q9HAQ2 790 aa6.34□□□□□ -1.39
SS18-214ENST00000580003 HNRNPCL2B2RXH8 293 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 LDB3O75112 727 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 SEC14L2O76054 403 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 LINC00271P0C7V0 271 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 TBX2Q13207 712 aaPredicted RBP6.33□□□□□ -1.4
SS18-214ENST00000580003 C6orf141Q5SZD1 244 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 WBP2NLQ6ICG8 309 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 UNQ6126/PRO20091Q6UXV3 157 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 EXOC3L1Q86VI1 746 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 PCYOX1LQ8NBM8 494 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 SMARCE1Q969G3 411 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 TMEM19Q96HH6 336 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 USP44Q9H0E7 712 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 PPP1R3EQ9H7J1 279 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 ZNF556Q9HAH1 456 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 ZNF112Q9UJU3 913 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 TINAGQ9UJW2 476 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 INTS6Q9UL03 887 aaKnown RBP6.33□□□□□ -1.4
SS18-214ENST00000580003 ICAM5Q9UMF0 924 aa6.33□□□□□ -1.4
SS18-214ENST00000580003 KRT10P13645 584 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 PIP4K2AP48426 406 aaPredicted RBP6.32□□□□□ -1.4
SS18-214ENST00000580003 CLCNKAP51800 687 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 RPL7AP62424 266 aaKnown RBP6.32□□□□□ -1.4
SS18-214ENST00000580003 CCNG2Q16589 344 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 ALG11Q2TAA5 492 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 CCDC70Q6NSX1 233 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 RGMBQ6NW40 437 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 TSSK4Q6SA08 328 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 SFR1Q86XK3 245 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 KCNH5Q8NCM2 988 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 NEK9Q8TD19 979 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 PSPC1Q8WXF1 523 aaKnown RBP6.32□□□□□ -1.4
SS18-214ENST00000580003 PIP5K1AQ99755 562 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 TMEM47Q9BQJ4 181 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 IRAK4Q9NWZ3 460 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 MCM9Q9NXL9 1143 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 MKLN1Q9UL63 735 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 CAPN7Q9Y6W3 813 aa6.32□□□□□ -1.4
SS18-214ENST00000580003 IGHV4OR15-8A0A075B7B6 117 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 A0A0G2JPF8 293 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 GOLGA6L9A6NEM1 432 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 IFITM10A6NMD0 228 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 HNRNPCL3B7ZW38 293 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 MID1O15344 667 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 BUB3O43684 328 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 HNRNPCL1O60812 293 aaKnown RBP6.31□□□□□ -1.4
SS18-214ENST00000580003 SPARCP09486 303 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms