RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 VPS26AO75436 327 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 SRP72O76094 671 aaKnown RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 RHOBTB1O94844 696 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 PGLSO95336 258 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 POP4O95707 220 aaKnown RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 CCDC166P0CW27 439 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 KITP10721 976 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 EN2P19622 333 aaPredicted RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 WEE1P30291 646 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 PTGER3P43115 390 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 ABCG1P45844 678 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 STC1P52823 247 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 NCALDP61601 193 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 IRF9Q00978 393 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 CACNG1Q06432 222 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 LMAN2Q12907 356 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 RCN2Q14257 317 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 CSHL1Q14406 222 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 DLG2Q15700 870 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 ZRANB3Q5FWF4 1079 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 GRAMD4Q6IC98 578 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 LINGO4Q6UY18 593 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 ACAD11Q709F0 780 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 SUGP1Q8IWZ8 645 aaKnown RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 TNS4Q8IZW8 715 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 RYBPQ8N488 228 aaPredicted RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 OR2AP1Q8NGE2 309 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 OR6Y1Q8NGX8 325 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 SHKBP1Q8TBC3 707 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 SLC22A17Q8WUG5 538 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 PPP2R3CQ969Q6 453 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 ZNF641Q96N77 438 aaPredicted RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 AARSD1Q9BTE6 412 aaKnown RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 CDH19Q9H159 772 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 KCNK13Q9HB14 408 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 SLC40A1Q9NP59 571 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 ARHGEF3Q9NR81 526 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 CXXC1Q9P0U4 656 aaPredicted RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 FCF1Q9Y324 198 aaKnown RBP11.13□□□□□ -0.63
SKA2-204ENST00000578519 PCDHB9Q9Y5E1 797 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 PCDHB1Q9Y5F3 818 aa11.13□□□□□ -0.63
SKA2-204ENST00000578519 UBA6A0AVT1 1052 aaPredicted RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 SYCE1LA8MT33 242 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 HIDE1A8MVS5 230 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 SPECC1L-ADORA2AF8WAN1 911 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 FCHO1O14526 889 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 FZD6O60353 706 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 PRLP01236 227 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ASLP04424 464 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ALOX15P16050 662 aaPredicted RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 ZNF7P17097 686 aaPredicted RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 POLR2EP19388 210 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 FDXRP22570 491 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 SERPINB3P29508 390 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ABL2P42684 1182 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 RGRP47804 291 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 RPL14P50914 215 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 SUOXP51687 545 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ARSDP51689 593 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ADARP55265 1226 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 GALNT1Q10472 559 aaPredicted RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 TRAF2Q12933 501 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 GPM6BQ13491 265 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 TEAD2Q15562 447 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 PITRM1Q5JRX3 1037 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ZCCHC23Q6ZST2 131 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 CEP97Q8IW35 865 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 CBARPQ8N350 705 aaPredicted RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 CELF5Q8N6W0 485 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 OR13C4Q8NGS5 318 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 RHEBL1Q8TAI7 183 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 STAG3L4Q8TBR4 150 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 WFIKKN2Q8TEU8 576 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 HEXDCQ8WVB3 486 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 IRF7Q92985 503 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 SKA1Q96BD8 255 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 EXOC2Q96KP1 924 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 GATA5Q9BWX5 397 aaPredicted RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 BBS2Q9BXC9 721 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 CPEB1Q9BZB8 566 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 LRMDAQ9H2I8 198 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 TFB2MQ9H5Q4 396 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 PFDN4Q9NQP4 134 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 SPHK2Q9NRA0 654 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 RAD18Q9NS91 495 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 KLC4Q9NSK0 619 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 ZNF358Q9NW07 568 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 CPSF2Q9P2I0 782 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 XPR1Q9UBH6 696 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 MRPS23Q9Y3D9 190 aaKnown RBP11.12□□□□□ -0.63
SKA2-204ENST00000578519 ZNF711Q9Y462 761 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 KCTD3Q9Y597 815 aa11.12□□□□□ -0.63
SKA2-204ENST00000578519 E5RI56 91 aa11.11□□□□□ -0.63
SKA2-204ENST00000578519 HGSO14964 777 aaPredicted RBP11.11□□□□□ -0.63
SKA2-204ENST00000578519 HDAC3O15379 428 aa11.11□□□□□ -0.63
SKA2-204ENST00000578519 HTRA2O43464 458 aaPredicted RBP11.11□□□□□ -0.63
SKA2-204ENST00000578519 IPO13O94829 963 aaKnown RBP11.11□□□□□ -0.63
SKA2-204ENST00000578519 CD160O95971 181 aa11.11□□□□□ -0.63
SKA2-204ENST00000578519 SLC4A1P02730 911 aa11.11□□□□□ -0.63
SKA2-204ENST00000578519 ESR1P03372 595 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms