RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF678Q5SXM1 525 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 LHX8Q68G74 356 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 OR52E8Q6IFG1 317 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 MRNIPQ6NTE8 343 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 SDCCAG8Q86SQ7 713 aaPredicted RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 PTERQ96BW5 349 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 HHIPL1Q96JK4 782 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 TRIB3Q96RU7 358 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 TTLL2Q9BWV7 592 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 MAGEH1Q9H213 219 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 NT5C1B-RDH14C9J2C7 533 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 ARVCFO00192 962 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 CFLARO15519 480 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 PEX1O43933 1283 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 ACSL4O60488 711 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 UPP2O95045 317 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 NDST3O95803 873 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 CD1DP15813 335 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 PEX2P28328 305 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 GNA12Q03113 381 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 ELAVL2Q12926 359 aaKnown RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 FLOT2Q14254 428 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 ANKS3Q6ZW76 656 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 OR13C4Q8NGS5 318 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 OR4L1Q8NH43 312 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 CDK5RAP1Q96SZ6 601 aaKnown RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 NPAS2Q99743 824 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 MGME1Q9BQP7 344 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 EBF3Q9H4W6 596 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 RETREG1Q9H6L5 497 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 POLR3BQ9NW08 1133 aaPredicted RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 UTP6Q9NYH9 597 aaKnown RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 C6orf203Q9P0P8 240 aaPredicted RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 BCAP29Q9UHQ4 241 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 DNMT3LQ9UJW3 386 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 PSMD13Q9UNM6 376 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 TRAF6Q9Y4K3 522 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 GREB1Q4ZG55 1949 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 UBDO15205 165 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TRPA1O75762 1119 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 SLC4A1P02730 911 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 GALTP07902 379 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 LYNP07948 512 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 PIRTP0C851 137 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 OGNP20774 298 aaKnown RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 ME2P23368 584 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 ATP5C1P36542 298 aaKnown RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 PKNOX1P55347 436 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 HERVK_113P63132 956 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 SQLEQ14534 574 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TRIP10Q15642 601 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 UNC50Q53HI1 259 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 GK5Q6ZS86 529 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TAS1R1Q7RTX1 841 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TMEM173Q86WV6 379 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 PQLC1Q8N2U9 271 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 BBS5Q8N3I7 341 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 OR7D4Q8NG98 312 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 OR52K2Q8NGK3 314 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 HMGCLL1Q8TB92 370 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 USP13Q92995 863 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 PSKH2Q96QS6 385 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TTPALQ9BTX7 342 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 ERVK-6Q9BXR3 956 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 MRPL1Q9BYD6 325 aaKnown RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 POPDC3Q9HBV1 291 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 CATSPERZQ9NTU4 200 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 ACTL7AQ9Y615 435 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 ZFP37Q9Y6Q3 630 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 H3BNC9 293 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 STX16-NPEPL1H3BU86 382 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 SMIM24O75264 130 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 SUPT7LO94864 414 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 UBTFL6P0CB48 400 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 ARSAP15289 507 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 ZNF37AP17032 561 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 MSX2P35548 267 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 CDH4P55283 916 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 MS4A2Q01362 244 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 STX5Q13190 355 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 PTK2BQ14289 1009 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 MAPRE2Q15555 327 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 PPP1R3AQ16821 1122 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TYSND1Q2T9J0 566 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 OGFRL1Q5TC84 451 aaPredicted RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 IL31Q6EBC2 164 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 CYHR1Q6ZMK1 362 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 TMA16Q96EY4 203 aaKnown RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 CDKN2AIPNLQ96HQ2 116 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 AARSD1Q9BTE6 412 aaKnown RBP10.08□□□□□ -0.8
VPS53-220ENST00000576149 SEPT3Q9UH03 358 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 LRFN2Q9ULH4 789 aa10.08□□□□□ -0.8
VPS53-220ENST00000576149 PSMD12O00232 456 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 BCAS2O75934 225 aaPredicted RBP10.07□□□□□ -0.8
VPS53-220ENST00000576149 UQCRBP14927 111 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 HOXD10P28358 340 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 PSMD8P48556 350 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 SLC11A2P49281 568 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 STC1P52823 247 aa10.07□□□□□ -0.8
VPS53-220ENST00000576149 AQP4P55087 323 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms