RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ARF5P84085 180 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 PPP3CAQ08209 521 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 ELP6Q0PNE2 266 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 FOXD4Q12950 439 aaPredicted RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 MTA1Q13330 715 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.18■□□□□ 0.18
VPS53-218ENST00000575207 DUS1LQ6P1R4 473 aaKnown RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 SLC30A9Q6PML9 568 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 GDPD4Q6W3E5 623 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 RYBPQ8N488 228 aaPredicted RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 OR7D4Q8NG98 312 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 ZSCAN31Q96LW9 406 aaPredicted RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 OR6C1Q96RD1 312 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 SPOCK3Q9BQ16 436 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 LGR4Q9BXB1 951 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 LRRC27Q9C0I9 530 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 TNMDQ9H2S6 317 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 AKIRIN1Q9H9L7 192 aaPredicted RBP16.18■□□□□ 0.18
VPS53-218ENST00000575207 PLEKHM1Q9Y4G2 1056 aa16.18■□□□□ 0.18
VPS53-218ENST00000575207 CXorf51AA0A1B0GTR3 108 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 RASA4BC9J798 803 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 H3BQV1 296 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 RASA4O43374 803 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 FUCA1P04066 466 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 GGCXP38435 758 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 KIR3DL1P43629 444 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 PPM1FP49593 454 aaPredicted RBP16.17■□□□□ 0.18
VPS53-218ENST00000575207 SUOXP51687 545 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 XKRXQ6PP77 449 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 CEP97Q8IW35 865 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 OR2AP1Q8NGE2 309 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 GRHL3Q8TE85 626 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 CLIC6Q96NY7 704 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 AGAP3Q96P47 875 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 KLHL3Q9UH77 587 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 FBXO2Q9UK22 296 aaPredicted RBP16.17■□□□□ 0.18
VPS53-218ENST00000575207 KIAA1257Q9ULG3 409 aa16.17■□□□□ 0.18
VPS53-218ENST00000575207 FARSAQ9Y285 508 aaKnown RBP16.17■□□□□ 0.18
VPS53-218ENST00000575207 GSRP00390 522 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 RPL34P49207 117 aaKnown RBP16.16■□□□□ 0.18
VPS53-218ENST00000575207 VAMP7P51809 220 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 RRADP55042 308 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 SH3BP2P78314 561 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 RAPSNQ13702 412 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 MYLK3Q32MK0 819 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.16■□□□□ 0.18
VPS53-218ENST00000575207 CNNM4Q6P4Q7 775 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 BIVMQ86UB2 503 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 CBARPQ8N350 705 aaPredicted RBP16.16■□□□□ 0.18
VPS53-218ENST00000575207 ARFGAP1Q8N6T3 406 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 SEMA4DQ92854 862 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 SLX1AQ9BQ83 275 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 POPDC2Q9HBU9 364 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 CBX8Q9HC52 389 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 FGF21Q9NSA1 209 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 ACTL7AQ9Y615 435 aa16.16■□□□□ 0.18
VPS53-218ENST00000575207 CACNA1CQ13936 2221 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 ILVBLA1L0T0 632 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 PDE2AO00408 941 aaPredicted RBP16.15■□□□□ 0.18
VPS53-218ENST00000575207 IST1P53990 364 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 CTBSQ01459 385 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 PTK2Q05397 1052 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 MTFR2Q6P444 385 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 FAM199XQ6PEV8 388 aaPredicted RBP16.15■□□□□ 0.18
VPS53-218ENST00000575207 ZNF783Q6ZMS7 281 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 ZNF683Q8IZ20 524 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 ACBD4Q8NC06 268 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 ELMO2Q96JJ3 720 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 SPON2Q9BUD6 331 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 KBTBD4Q9NVX7 518 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 SRPRBQ9Y5M8 271 aaKnown RBP16.15■□□□□ 0.18
VPS53-218ENST00000575207 MXRA5Q9NR99 2828 aa16.15■□□□□ 0.18
VPS53-218ENST00000575207 CNTRLQ7Z7A1 2325 aa16.14■□□□□ 0.18
VPS53-218ENST00000575207 A0A1W2PQJ5 194 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 ALPPP05187 535 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 CEACAM5P06731 702 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 ADRA1BP35368 520 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 LIG3P49916 1009 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 SNRPD1P62314 119 aaKnown RBP16.14■□□□□ 0.17
VPS53-218ENST00000575207 LLGL1Q15334 1064 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 HGSNATQ68CP4 663 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 ZNF765Q7L2R6 523 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 PPP1R3BQ86XI6 285 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 SFRP1Q8N474 314 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 ZADH2Q8N4Q0 377 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 PDILTQ8N807 584 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 SLC37A2Q8TED4 501 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 TFAP2BQ92481 460 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 TM9SF4Q92544 642 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 ARSGQ96EG1 525 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 HMCESQ96FZ2 354 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 TRAPPC9Q96Q05 1148 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 WDR26Q9H7D7 661 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 MMRN2Q9H8L6 949 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 ATP13A1Q9HD20 1204 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 SEMA3GQ9NS98 782 aa16.14■□□□□ 0.17
VPS53-218ENST00000575207 DRGXA6NNA5 263 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 FANCGO15287 622 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 TOX3O15405 576 aaPredicted RBP16.13■□□□□ 0.17
VPS53-218ENST00000575207 PAGE1O75459 146 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms