RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 DMP1Q13316 513 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 GPM6BQ13491 265 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 GRM7Q14831 915 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 STK38Q15208 465 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 OASLQ15646 514 aaKnown RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 MAPK6Q16659 721 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 AAK1Q2M2I8 961 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 EPC2Q52LR7 807 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 ANO7Q6IWH7 933 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 SHQ1Q6PI26 577 aaKnown RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 GLB1LQ6UWU2 654 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 IKBIPQ70UQ0 350 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 TMCO2Q7Z6W1 182 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 ECHDC2Q86YB7 292 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 CCDC105Q8IYK2 499 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 GPR135Q8IZ08 494 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 LILRA3Q8N6C8 439 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 POMGNT2Q8NAT1 580 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 RNF169Q8NCN4 708 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 SLC17A8Q8NDX2 589 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 Q8NFD4 153 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 URGCPQ8TCY9 931 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 CSGALNACT1Q8TDX6 532 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 P2RX5Q93086 422 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 VPS33AQ96AX1 596 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 ZNF689Q96CS4 500 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 TMEM176AQ96HP8 235 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 APOPT1Q96IL0 206 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PPP1R13BQ96KQ4 1090 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 MRGPRX4Q96LA9 322 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 GNRHR2Q96P88 292 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 OR14A2Q96R54 314 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 FUZQ9BT04 418 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 MAK16Q9BXY0 300 aaKnown RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 SMURF2Q9HAU4 748 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 AGPAT5Q9NUQ2 364 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PRMT7Q9NVM4 692 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 MOCS1Q9NZB8 636 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 CHD7Q9P2D1 2997 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 ZNF624Q9P2J8 865 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 LPAR3Q9UBY5 353 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 PCSK1NQ9UHG2 260 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 AJAP1Q9UKB5 411 aaPredicted RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 CFAP45Q9UL16 551 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 MTUS1Q9ULD2 1270 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 CA14Q9ULX7 337 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 CAMK2AQ9UQM7 478 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 MTMR6Q9Y217 621 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 MED16Q9Y2X0 877 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 ATP6V1DQ9Y5K8 247 aa6.27□□□□□ -1.41
VPS53-212ENST00000572259 SRPRBQ9Y5M8 271 aaKnown RBP6.27□□□□□ -1.41
VPS53-212ENST00000572259 CNTNAP2Q9UHC6 1331 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 TRANK1O15050 2925 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 TRIP11Q15643 1979 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 A0A0C4DFX4 3053 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 A0A087WWV3 80 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CCDC169A6NNP5 214 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 C5orf67F2Z3F1 127 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 K7ERI5 159 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 EXOC3O60645 756 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 LPXNO60711 386 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CSDE1O75534 798 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 SNX4O95219 450 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CCDC175P0C221 793 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 PLA2G4BP0C869 781 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 FGFR4P22455 802 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 GLRA2P23416 452 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 EPHA8P29322 1005 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 MARCKSP29966 332 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 CDC25AP30304 524 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 BUD31P41223 144 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 ALDH7A1P49419 539 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 BCAT1P54687 386 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CEBPZQ03701 1054 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 RNASELQ05823 741 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 ACTN3Q08043 901 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 RESTQ13127 1097 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 SLC13A2Q13183 592 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 MRPL49Q13405 166 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 RAB32Q13637 225 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 SLC39A14Q15043 492 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 FAM187BQ17R55 369 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 PRICKLE4Q2TBC4 344 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 ERMARDQ5T6L9 678 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 FAM69AQ5T7M9 428 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 EMC10Q5UCC4 262 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 RINT1Q6NUQ1 792 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 SLC30A9Q6PML9 568 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 FAM111BQ6SJ93 734 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 LRRC43Q8N309 656 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 SYT2Q8N9I0 419 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 IL17RDQ8NFM7 739 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 METTL6Q8TCB7 284 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 ANP32BQ92688 251 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 RAB24Q969Q5 203 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 SYAP1Q96A49 352 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 PGAP3Q96FM1 320 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 VPS39Q96JC1 886 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 RAB3IPQ96QF0 476 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 C17orf80Q9BSJ5 609 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms