RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 BMP6P22004 513 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 KRT9P35527 623 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 GNPDA1P46926 289 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 LEPRP48357 1165 aaKnown RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 FOXM1Q08050 763 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 ELOAQ14241 798 aaKnown RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 GRM3Q14832 879 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 NADK2Q4G0N4 442 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 C6orf15Q6UXA7 325 aaPredicted RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 RBM43Q6ZSC3 357 aaKnown RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 ZDHHC17Q8IUH5 632 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 TTC13Q8NBP0 860 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 NELFBQ8WX92 580 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 NCSTNQ92542 709 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 MARVELD3Q96A59 401 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 STAMBPL1Q96FJ0 436 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 TBCBQ99426 244 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 NPY6RQ99463 290 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 SLC25A23Q9BV35 468 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 PDCL3Q9H2J4 239 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 PPARGC1AQ9UBK2 798 aaKnown RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 KLHL3Q9UH77 587 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 CROTQ9UKG9 612 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 G3BP2Q9UN86 482 aaKnown RBP11.09□□□□□ -0.63
VPS53-207ENST00000570510 SLC5A6Q9Y289 635 aa11.09□□□□□ -0.63
VPS53-207ENST00000570510 CHD5Q8TDI0 1954 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 POLQO75417 2590 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ARHGAP10A1A4S6 786 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 GTPBP10A4D1E9 387 aaKnown RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 HNRNPRO43390 633 aaKnown RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 DNAJB5O75953 348 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 PIGNO95427 931 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ERBB2P04626 1255 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 HOXC4P09017 264 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 TFE3P19532 575 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 AK4P27144 223 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 CSF2RBP32927 897 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 MAPK9P45984 424 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 MAPKAPK2P49137 400 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 SQSTM1Q13501 440 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ACOX1Q15067 660 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 AGERQ15109 404 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 SLC25A52Q3SY17 297 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 BRAT1Q6PJG6 821 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ENOSF1Q7L5Y1 443 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 C17orf82Q86X59 251 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 BMPERQ8N8U9 685 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 C1orf131Q8NDD1 294 aaKnown RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 ZNF397Q8NF99 534 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 HCAR2Q8TDS4 363 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 PATE1Q8WXA2 126 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 CASKIN2Q8WXE0 1202 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 KREMEN1Q96MU8 473 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 LGR4Q9BXB1 951 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 SPRY4Q9C004 299 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 SUV39H2Q9H5I1 410 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 STN1Q9H668 368 aaKnown RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 APMAPQ9HDC9 416 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ACP6Q9NPH0 428 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 PHPT1Q9NRX4 125 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 TRNAU1APQ9NX07 287 aaKnown RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 OR12D3Q9UGF7 316 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ERRFI1Q9UJM3 462 aaPredicted RBP11.08□□□□□ -0.64
VPS53-207ENST00000570510 CNTN6Q9UQ52 1028 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 ATP8A1Q9Y2Q0 1164 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 MFHAS1Q9Y4C4 1052 aa11.08□□□□□ -0.64
VPS53-207ENST00000570510 MED13Q9UHV7 2174 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 TRBV23OR9-2A0A075B6M9 112 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 GOLGA6CA6NDK9 693 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 GOLGA6BA6NDN3 693 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 WIPF3A6NGB9 483 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 I6L893 689 aaPredicted RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 KDELR3O43731 214 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 CREG1O75629 220 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 LDLRP01130 860 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 PDGFAP04085 211 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 GOLGA6DP0CG33 693 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 MYCLP1P12525 358 aaPredicted RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 RHOQP17081 205 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 F8A1P23610 371 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 GRNP28799 593 aaKnown RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 MMP12P39900 470 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 ACTR1BP42025 376 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 PMS1P54277 932 aaKnown RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 ACTR1AP61163 376 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 MAP7Q14244 749 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 FAM102AQ5T9C2 384 aaPredicted RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 PNCKQ6P2M8 343 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 LYSMD3Q7Z3D4 306 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 TMEM135Q86UB9 458 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 SLC47A2Q86VL8 602 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 FAM131BQ86XD5 332 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 ZNF761Q86XN6 746 aaPredicted RBP11.07□□□□□ -0.64
VPS53-207ENST00000570510 DNAAF5Q86Y56 855 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 RASGRP3Q8IV61 690 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 TRIM59Q8IWR1 403 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 NAGSQ8N159 534 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 NETO2Q8NC67 525 aa11.07□□□□□ -0.64
VPS53-207ENST00000570510 LMO3Q8TAP4 145 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms