RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 VPS33AQ96AX1 596 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RMND5BQ96G75 393 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 ATP6V1G3Q96LB4 118 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ZNF560Q96MR9 790 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 INPP4AQ96PE3 977 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 NAPGQ99747 312 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 ADAM2Q99965 735 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 LLPHQ9BRT6 129 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 HERPUD2Q9BSE4 406 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 C17orf80Q9BSJ5 609 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 KIFC3Q9BVG8 833 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 NUP85Q9BW27 656 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 HEMGNQ9BXL5 484 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ASPSCR1Q9BZE9 553 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SLC13A1Q9BZW2 595 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 TMEM60Q9H2L4 133 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 LRRC19Q9H756 370 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ECT2Q9H8V3 914 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SIAEQ9HAT2 523 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 TUFT1Q9NNX1 390 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CD209Q9NNX6 404 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 IARS2Q9NSE4 1012 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 PLK2Q9NYY3 685 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ZNF624Q9P2J8 865 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 THEGQ9P2T0 379 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 EXTL2Q9UBQ6 330 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 SERPINB13Q9UIV8 391 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.3□□□□□ -1.88
VPS35-208ENST00000568612 ARHGAP26Q9UNA1 814 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MTMR6Q9Y217 621 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CDYLQ9Y232 598 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ZNF175Q9Y473 711 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 IPPQ9Y573 584 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 DMRT1Q9Y5R6 373 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CDC42BPBQ9Y5S2 1711 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 QRICH2Q9H0J4 1663 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 UGGT1Q9NYU2 1555 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ARAP3Q8WWN8 1544 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 DUOX2Q9NRD8 1548 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ABCC5O15440 1437 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 MYH11P35749 1972 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 C15orf38-AP3S2A0A0A6YYH1 394 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PNMA6EA0A0J9YXQ4 647 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 A0A0U1RQJ8 604 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CCDC78A2IDD5 438 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 FAM172BPA6NC97 362 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PCP4L1A6NKN8 68 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TRPC5OSA6NMA1 111 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PRSS44E7EML9 344 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ATP6V1G2-DDX39BF2Z307 99 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SGK1O00141 431 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 O00370 1275 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 AKAP10O43572 662 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TSPAN6O43657 245 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 AP1G1O43747 822 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SPOPO43791 374 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PIP5K1CO60331 668 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 DTNBO60941 627 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ATP2C2O75185 946 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 AGFG2O95081 481 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 LARGE1O95461 756 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ESRRBO95718 433 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 OAS1P00973 400 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 GLAP06280 429 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CAPN1P07384 714 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 WEE2P0C1S8 567 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SBK3P0C264 359 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 HKR1P10072 659 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 KRT3P12035 628 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 FCER1AP12319 257 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 EEF2P13639 858 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 KRT5P13647 590 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CSF2RAP15509 400 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 EDNRBP24530 442 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PSMA2P25787 234 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TYK2P29597 1187 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 HLA-FP30511 346 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SHMT1P34896 483 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 CTNNA1P35221 906 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 WASP42768 502 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 HCAR3P49019 387 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 POU3F4P49335 361 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 STARP49675 285 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 SULT1E1P49888 294 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 NKX2-5P52952 324 aaPredicted RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 COPB1P53618 953 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 ADKP55263 362 aaKnown RBP3.29□□□□□ -1.88
VPS35-208ENST00000568612 CXADRP78310 365 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 IFITM2Q01629 132 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 ZBTB16Q05516 673 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 PLD1Q13393 1074 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 DMC1Q14565 340 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 POU6F1Q14863 301 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 RAB39AQ14964 217 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 EFTUD2Q15029 972 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS35-208ENST00000568612 SLC39A14Q15043 492 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 NCF4Q15080 339 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 TSC22D1Q15714 1073 aa3.29□□□□□ -1.88
VPS35-208ENST00000568612 UGP2Q16851 508 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms